Miyakogusa Predicted Gene

Lj6g3v1954020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1954020.1 Non Chatacterized Hit- tr|Q5N168|Q5N168_SYNP6
Putative uncharacterized protein OS=Synechococcus sp.
,33.65,5e-19,seg,NULL; CbiQ,ABC/ECF transporter, transmembrane
component,CUFF.60324.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21580.1 | Symbols:  | cobalt ion transmembrane transporters ...   322   1e-88

>AT3G21580.1 | Symbols:  | cobalt ion transmembrane transporters |
           chr3:7602009-7603720 REVERSE LENGTH=391
          Length = 391

 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/254 (62%), Positives = 188/254 (74%)

Query: 1   MRFGLVIYLTLLSIWVLPRSTWTDQLGRVYLLSGLLFITSGLGADGAPALVQLRTPPPAV 60
           +R GLV+   LLSI VLPR  W DQL RV LLSG+LFIT GLG+DGAP ++Q RTPP ++
Sbjct: 138 VRLGLVLCTALLSILVLPRQVWIDQLARVSLLSGILFITLGLGSDGAPPMLQSRTPPSSI 197

Query: 61  TGLPNLPVSLTGYSYLISKLGPLTFTRKGLSVASTVACLTFTVFQSASLCLTTTTPEQLA 120
           T LPNLP+SL+GYSY++ KLGPL FTRKGLSV ST ACLTF +FQSAS+CL TTTPEQLA
Sbjct: 198 TSLPNLPMSLSGYSYMLLKLGPLQFTRKGLSVGSTAACLTFIIFQSASICLATTTPEQLA 257

Query: 121 FALRWFMLPLRYXXXXXXXXXXXXXXXXXXXXXXFDEVRNLAMGIVSRRVNWKQLTVMET 180
            ALRWF+ PL Y                      FDEVR++++GIVSRRVNW+QLTV+ET
Sbjct: 258 LALRWFLFPLTYIGVPVSEIILTLLLSLRFINLVFDEVRSVSLGIVSRRVNWQQLTVLET 317

Query: 181 IDIFFNYFRRIFKNIFSHAEQISQAMIVRGFKGDVGSQKIYFLSEPSFGMADIICLLCLK 240
           +DIF ++ RRIFKNIF HAEQISQAMIVRGF+G+  S KIYF S  S   AD   +LCL 
Sbjct: 318 LDIFASFIRRIFKNIFRHAEQISQAMIVRGFRGESSSHKIYFFSGSSNKFADFASVLCLI 377

Query: 241 IVIGAALLSEYYFV 254
            VI  ALLSEY+ V
Sbjct: 378 GVISTALLSEYFLV 391