Miyakogusa Predicted Gene

Lj6g3v1932850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1932850.1 tr|I3SWB6|I3SWB6_LOTJA 60S ribosomal protein L18a
OS=Lotus japonicus PE=2 SV=1,100,0,60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a; Ribosomal_L18ae,Ribosomal protein
L18a/LX,NODE_25735_length_303_cov_988.501648.path2.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g046320.1 | 60S ribosomal protein L18a-3 | HC | chr3:15289...   185   7e-48
Medtr5g091135.1 | 60S ribosomal protein L18a-3 | HC | chr5:39716...   183   3e-47
Medtr5g091120.1 | 60S ribosomal protein L18a-3 | HC | chr5:39707...   183   3e-47
Medtr2g098000.1 | 60S ribosomal protein L18a-3 | HC | chr2:41868...   183   3e-47
Medtr3g046320.2 | 60S ribosomal protein L18a-3 | HC | chr3:15289...   178   9e-46

>Medtr3g046320.1 | 60S ribosomal protein L18a-3 | HC |
          chr3:15289143-15298145 | 20130731
          Length = 178

 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 90/92 (97%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          M TF++HQYQVVGRALPT+ D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1  MATFKYHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPTKIKN+GIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNM 92


>Medtr5g091135.1 | 60S ribosomal protein L18a-3 | HC |
          chr5:39716434-39718748 | 20130731
          Length = 178

 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 89/92 (96%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          MV  +FHQYQVVGRALPT+ D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1  MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPTKIKN+GIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNM 92


>Medtr5g091120.1 | 60S ribosomal protein L18a-3 | HC |
          chr5:39707622-39709721 | 20130731
          Length = 178

 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 89/92 (96%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          MV  +FHQYQVVGRALPT+ D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1  MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPTKIKN+GIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNM 92


>Medtr2g098000.1 | 60S ribosomal protein L18a-3 | HC |
          chr2:41868668-41870282 | 20130731
          Length = 178

 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 89/92 (96%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          MV  +FHQYQVVGRALPT+ D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1  MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPTKIKN+GIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNM 92


>Medtr3g046320.2 | 60S ribosomal protein L18a-3 | HC |
          chr3:15289143-15298145 | 20130731
          Length = 176

 Score =  178 bits (452), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 82/88 (93%), Positives = 87/88 (98%)

Query: 5  RFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64
          ++HQYQVVGRALPT+ D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN
Sbjct: 3  QYHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 62

Query: 65 EIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          EIFEKNPTKIKN+GIWLRYQSRTGYHNM
Sbjct: 63 EIFEKNPTKIKNYGIWLRYQSRTGYHNM 90