Miyakogusa Predicted Gene

Lj6g3v1932850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1932850.1 tr|I3SWB6|I3SWB6_LOTJA 60S ribosomal protein L18a
OS=Lotus japonicus PE=2 SV=1,100,0,60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a; Ribosomal_L18ae,Ribosomal protein
L18a/LX,NODE_25735_length_303_cov_988.501648.path2.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34480.1 | Symbols:  | Ribosomal protein L18ae/LX family prot...   177   1e-45
AT3G14600.1 | Symbols:  | Ribosomal protein L18ae/LX family prot...   173   2e-44
AT1G29965.1 | Symbols:  | Ribosomal protein L18ae/LX family prot...   169   4e-43
AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 | ...   164   8e-42

>AT2G34480.1 | Symbols:  | Ribosomal protein L18ae/LX family
          protein | chr2:14532916-14534161 REVERSE LENGTH=178
          Length = 178

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/92 (90%), Positives = 86/92 (93%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          M  FRFHQYQVVGRALPT+ D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1  MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEI+EKNPT IKNFGIWLRYQSRTGYHNM
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNM 92


>AT3G14600.1 | Symbols:  | Ribosomal protein L18ae/LX family
          protein | chr3:4910773-4911933 FORWARD LENGTH=178
          Length = 178

 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 86/92 (93%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          M  FRFHQYQVVGRALPT++D+HPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+
Sbjct: 1  MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPT IKN+GIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNM 92


>AT1G29965.1 | Symbols:  | Ribosomal protein L18ae/LX family
          protein | chr1:10498458-10499373 REVERSE LENGTH=178
          Length = 178

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 83/92 (90%)

Query: 1  MVTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
          M   R HQYQVVGRALPT+ D+ PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1  MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61 LAINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
          LAINEIFEKNPT IKNFGIWLRYQSRTGYHNM
Sbjct: 61 LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNM 92


>AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |
           chr1:10498458-10501311 REVERSE LENGTH=312
          Length = 312

 Score =  164 bits (416), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 82/91 (90%)

Query: 2   VTFRFHQYQVVGRALPTDSDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVL 61
            +   HQYQVVGRALPT+ D+ PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+L
Sbjct: 136 CSIALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQML 195

Query: 62  AINEIFEKNPTKIKNFGIWLRYQSRTGYHNM 92
           AINEIFEKNPT IKNFGIWLRYQSRTGYHNM
Sbjct: 196 AINEIFEKNPTTIKNFGIWLRYQSRTGYHNM 226