Miyakogusa Predicted Gene

Lj6g3v1787880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1787880.1 tr|Q2HTI6|Q2HTI6_MEDTR Alternative oxidase
OS=Medicago truncatula GN=MTR_2g025140 PE=3 SV=1,79.18,0,seg,NULL;
AOX,Alternative oxidase,CUFF.59933.1
         (340 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g025140.1 | ubiquinol oxidase | HC | chr2:8939905-8935418 ...   543   e-155
Medtr4g094222.1 | ubiquinol oxidase 1a | HC | chr4:37468261-3747...    75   1e-13
Medtr5g070680.1 | ubiquinol oxidase 1a | HC | chr5:29933297-2993...    64   2e-10
Medtr5g070870.1 | ubiquinol oxidase 1a | HC | chr5:29936021-2993...    64   2e-10
Medtr5g026620.1 | ubiquinol oxidase 1a | HC | chr5:10973893-1097...    64   2e-10
Medtr5g026620.2 | ubiquinol oxidase 1a | HC | chr5:10973817-1097...    62   6e-10
Medtr5g045350.1 | hypothetical protein | HC | chr5:19906765-1990...    51   2e-06

>Medtr2g025140.1 | ubiquinol oxidase | HC | chr2:8939905-8935418 |
           20130731
          Length = 342

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 252/302 (83%), Positives = 281/302 (93%), Gaps = 3/302 (0%)

Query: 42  VRATVVKDTEGKVVVEKTFPSKI-PLQTGAEENVSDSDSSPPTAFELGVIKVEQSINIFL 100
           +R+++++D E KV+ + TFPSK  PL +  E + +D D+S  +A+E GVIKVEQS+NIFL
Sbjct: 41  IRSSLLQDKEDKVITQNTFPSKTSPLDSVTENSTNDDDTSSTSAWEKGVIKVEQSVNIFL 100

Query: 101 TDSVIKILDALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAES 160
           TDSVIKILDALYRDRNYARFFVLETIARVPYFAFMS+LHMYESFGWWRRADYLKVHFAES
Sbjct: 101 TDSVIKILDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAES 160

Query: 161 WNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFE 220
           WNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMY ISPRMAYHFSECVE+HAFE
Sbjct: 161 WNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFE 220

Query: 221 TYDKFIKDQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNV 280
           TYDKFIK+QGEELKK+PAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRP I+NLYDVF+N+
Sbjct: 221 TYDKFIKEQGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNI 280

Query: 281 RDDEAEHCKTMKACQTHGNLRSPHSY--AEDDEDTVCPLEADCEGIVDCIKKSVTSSPAK 338
           RDDEAEHCKTM+ACQT+GNLRSPHSY  AEDD+++VC +EA CEGIVDCIKKSVTS+PAK
Sbjct: 281 RDDEAEHCKTMRACQTYGNLRSPHSYADAEDDDESVCTIEAGCEGIVDCIKKSVTSNPAK 340

Query: 339 VK 340
           VK
Sbjct: 341 VK 342


>Medtr4g094222.1 | ubiquinol oxidase 1a | HC |
           chr4:37468261-37471472 | 20130731
          Length = 345

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 109 DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 168
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 159 DVFFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWVKALLEEAENERMHLM 218

Query: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFETYDKFIKD 228
            M EL     W++RFL   +   ++    ++Y +SP++A+     +E  A  +Y +++KD
Sbjct: 219 TMVELVKPK-WYERFLVLAVQGVFFNAFFVLYILSPKVAHRVVGYLEEEAIHSYTEYLKD 277

Query: 229 -QGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVRDDEAEH 287
                ++ +PAP +A++Y+                   R PK   L DV   +R DEA H
Sbjct: 278 IDSGAIENVPAPAIAIDYW-------------------RLPKDAKLKDVITVIRADEAHH 318


>Medtr5g070680.1 | ubiquinol oxidase 1a | HC |
           chr5:29933297-29930958 | 20130731
          Length = 323

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 99  FLTDSVIKILDALY-RDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 157
           F +   +++L  LY ++R      +LETIA VP      +LH+     +     ++K   
Sbjct: 126 FRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPPMVGGMLLHLKSLRKFQHTGGWIKALL 185

Query: 158 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENH 217
            E+ NE  HL+ M EL   + W +R L       ++    + Y +SP+ A+ F   +E  
Sbjct: 186 EEAENERMHLMTMVELVKPS-WHERLLVITAQGVFFNAFFVFYILSPKTAHRFVGYLEEE 244

Query: 218 AFETYDKFIKD-QGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDV 276
           A  +Y + +   +  +++ +PAP +A++Y+                   R PK   L DV
Sbjct: 245 AVISYTQHLNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDV 285

Query: 277 FVNVRDDEAEH 287
              +R DEA H
Sbjct: 286 ITVIRADEAHH 296


>Medtr5g070870.1 | ubiquinol oxidase 1a | HC |
           chr5:29936021-29933520 | 20130731
          Length = 324

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 99  FLTDSVIKILDALY-RDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 157
           F +   +++L  LY ++R      +LETIA VP      +LH+     +     ++K   
Sbjct: 127 FRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALL 186

Query: 158 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENH 217
            E+ NE  HL+ M EL   + W +R L       ++    + Y +SP++A+ F   +E  
Sbjct: 187 EEAENERMHLMTMVELVKPS-WHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEE 245

Query: 218 AFETYDKFIKD-QGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDV 276
           A  +Y +++   +  +++ +PAP +A++Y+              R+PN        L DV
Sbjct: 246 AVISYTQYLNAIESGKVENVPAPAIAIDYW--------------RLPND-----ATLKDV 286

Query: 277 FVNVRDDEAEH 287
              +R DEA H
Sbjct: 287 VTVIRADEAHH 297


>Medtr5g026620.1 | ubiquinol oxidase 1a | HC |
           chr5:10973893-10970470 | 20130731
          Length = 330

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 109 DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 168
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 144 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 203

Query: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFETYDKFIK- 227
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 204 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKE 262

Query: 228 -DQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVRDDEAE 286
            D+G  ++ +PAP +A++Y+                   + P+   L DV   VR DEA 
Sbjct: 263 LDKG-NIENVPAPAIAIDYW-------------------QLPQNSTLRDVVEVVRADEAH 302

Query: 287 H 287
           H
Sbjct: 303 H 303


>Medtr5g026620.2 | ubiquinol oxidase 1a | HC |
           chr5:10973817-10971044 | 20130731
          Length = 262

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 109 DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 168
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 76  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 135

Query: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFETYDKFIK- 227
              E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y +F+K 
Sbjct: 136 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKE 194

Query: 228 -DQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVRDDEAE 286
            D+G  ++ +PAP +A++Y+                   + P+   L DV   VR DEA 
Sbjct: 195 LDKG-NIENVPAPAIAIDYW-------------------QLPQNSTLRDVVEVVRADEAH 234

Query: 287 H 287
           H
Sbjct: 235 H 235


>Medtr5g045350.1 | hypothetical protein | HC |
           chr5:19906765-19909774 | 20130731
          Length = 136

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 150 ADYLKVHFAESWNEMHHLLIME 171
           ADYLKVHFAESWNEMHHLLIME
Sbjct: 105 ADYLKVHFAESWNEMHHLLIME 126