Miyakogusa Predicted Gene
- Lj6g3v1787880.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1787880.1 tr|Q2HTI6|Q2HTI6_MEDTR Alternative oxidase
OS=Medicago truncatula GN=MTR_2g025140 PE=3 SV=1,79.18,0,seg,NULL;
AOX,Alternative oxidase,CUFF.59933.1
(340 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family prot... 477 e-135
AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:25683... 74 1e-13
AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A |... 67 1e-11
AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D | chr1:116... 67 1e-11
AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:102... 62 5e-10
AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:790... 61 1e-09
>AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family protein
| chr4:11769967-11772350 REVERSE LENGTH=351
Length = 351
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/298 (75%), Positives = 254/298 (85%), Gaps = 6/298 (2%)
Query: 42 VRATVVKDTEGKVVVEKTFPSKIPLQTGAEENVSDSDSSPPTAFELGVIKVEQSINIFLT 101
V+AT+++D E KVVVE++F ++ T E + S SS +AFE +IK+EQ +N+FLT
Sbjct: 55 VQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSST-SAFETWIIKLEQGVNVFLT 113
Query: 102 DSVIKILDALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESW 161
DSVIKILD LYRDR YARFFVLETIARVPYFAFMSVLHMYE+FGWWRRADYLKVHFAESW
Sbjct: 114 DSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESW 173
Query: 162 NEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFET 221
NEMHHLLIMEELGGN+WWFDRFLAQHIA FYYFMT +Y +SPRMAYHFSECVE+HA+ET
Sbjct: 174 NEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYET 233
Query: 222 YDKFIKDQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVR 281
YDKF+K GEELK +PAP++AV YYTGGDLYLFDEFQTSR PNTRRP IENLYDVFVN+R
Sbjct: 234 YDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIR 293
Query: 282 DDEAEHCKTMKACQTHGNLRSPHSYAEDDE-----DTVCPLEADCEGIVDCIKKSVTS 334
DDEAEHCKTM+ACQT G+LRSPHS EDD+ V P EA CEGIVDC+KKS+TS
Sbjct: 294 DDEAEHCKTMRACQTLGSLRSPHSILEDDDTEEESGCVVPEEAHCEGIVDCLKKSITS 351
>AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 |
chr5:25683965-25685664 REVERSE LENGTH=353
Length = 353
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 104 VIKIL----DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAE 159
++K+L D ++ R R +LET+A VP +LH+ + ++K E
Sbjct: 158 IVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEE 217
Query: 160 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAF 219
+ NE HL+ M EL W ++R L + ++ + Y ISPR+A+ +E A
Sbjct: 218 AENERMHLMTMMELVKPKW-YERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAI 276
Query: 220 ETYDKFIKD-QGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFV 278
+Y +F+KD +++ + AP +A++Y+ R PK L DV
Sbjct: 277 HSYTEFLKDIDNGKIENVAAPAIAIDYW-------------------RLPKDATLKDVVT 317
Query: 279 NVRDDEAEH 287
+R DEA H
Sbjct: 318 VIRADEAHH 326
>AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A |
chr3:7906890-7908416 FORWARD LENGTH=354
Length = 354
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 109 DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 168
D ++ R R +LET+A VP +LH + + ++K E+ NE HL+
Sbjct: 168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227
Query: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFETYDKFIK- 227
E+ W++R L + ++ L Y ISP+ A+ +E A +Y +F+K
Sbjct: 228 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286
Query: 228 -DQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVRDDEAE 286
D+G ++ +PAP +A++Y+ R P L DV + VR DEA
Sbjct: 287 LDKG-NIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAH 326
Query: 287 H 287
H
Sbjct: 327 H 327
>AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D |
chr1:11667237-11668569 REVERSE LENGTH=318
Length = 318
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 22/191 (11%)
Query: 99 FLTDSVIKILDALYRDRNY-ARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 157
+ T +KI L+ R + +LET+A VP +LH+ + ++K
Sbjct: 121 YWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALL 180
Query: 158 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENH 217
E+ NE HL+ EL W ++R + + ++ L Y ISP++A+ + +E
Sbjct: 181 EEAENERMHLMTFIELSQPKW-YERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEE 239
Query: 218 AFETYDKFIKD-QGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDV 276
A +Y +F+KD + + PAP +A++Y+ R PK L DV
Sbjct: 240 AVNSYTEFLKDIDAGKFENSPAPAIAIDYW-------------------RLPKDATLRDV 280
Query: 277 FVNVRDDEAEH 287
+R DEA H
Sbjct: 281 VYVIRADEAHH 291
>AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C |
chr3:10229289-10230595 REVERSE LENGTH=329
Length = 329
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 96 INIFLTDSVIKILDALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKV 155
I ++ S+ D ++ R R +LET+A VP ++H + + ++K
Sbjct: 130 IAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKA 189
Query: 156 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVE 215
E+ NE HL+ E+ W++R L + ++ + Y ISP+ A+ +E
Sbjct: 190 LLEEAENERMHLMTFMEVAKPK-WYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLE 248
Query: 216 NHAFETYDKFIK--DQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENL 273
A +Y +F+K D G ++ +PAP +AV+Y+ R L
Sbjct: 249 EEAIHSYTEFLKELDNG-NIENVPAPAIAVDYW-------------------RLEADATL 288
Query: 274 YDVFVNVRDDEAEH 287
DV + VR DEA H
Sbjct: 289 RDVVMVVRADEAHH 302
>AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B |
chr3:7904156-7905384 FORWARD LENGTH=325
Length = 325
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 109 DALYRDRNYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 168
D ++ R R +LET+A VP ++H + + ++K E+ NE HL+
Sbjct: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLM 198
Query: 169 IMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMAYHFSECVENHAFETYDKFIK- 227
E+ W ++R L + ++ L Y ISP+ A+ +E A +Y +F+K
Sbjct: 199 TFMEVAKPNW-YERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 257
Query: 228 -DQGEELKKLPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPKIENLYDVFVNVRDDEAE 286
D G ++ +PAP +A++Y+ R L DV + VR DEA
Sbjct: 258 LDNG-NIENVPAPAIAIDYW-------------------RLEADATLRDVVMVVRADEAH 297
Query: 287 H 287
H
Sbjct: 298 H 298