Miyakogusa Predicted Gene

Lj6g3v1776660.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1776660.1 Non Chatacterized Hit- tr|A9P8D3|A9P8D3_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,65.22,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.59960.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22290.1 | Symbols:  | Ubiquitin-specific protease family C19...   395   e-110
AT1G16860.1 | Symbols:  | Ubiquitin-specific protease family C19...   322   2e-88
AT1G78880.1 | Symbols:  | Ubiquitin-specific protease family C19...   307   5e-84

>AT4G22290.1 | Symbols:  | Ubiquitin-specific protease family
           C19-related protein | chr4:11783199-11785730 REVERSE
           LENGTH=445
          Length = 445

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 207/228 (90%)

Query: 28  PVVVLMIWNCCWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSYQRVPR 87
           P +V+++WNC W R+GLL F+K+YPDAELRGAIDGQ+VKVTGVVTCGSIPLESS+QR PR
Sbjct: 218 PAIVVLVWNCVWRRKGLLSFIKKYPDAELRGAIDGQFVKVTGVVTCGSIPLESSFQRTPR 277

Query: 88  CVYVSTELFEYKGLGGTSANPKHRCLSWGSRYSEKYVADFYISDFQTGLRALVKAGYGAK 147
           CVYVSTEL+EYKG GG SANPKHRC SWGSR++EKYV+DFYISDFQ+GLRALVKAGYG+K
Sbjct: 278 CVYVSTELYEYKGFGGKSANPKHRCFSWGSRHAEKYVSDFYISDFQSGLRALVKAGYGSK 337

Query: 148 VAPFVNPTTVVDVTKGNRELSPNFVGWLADRKLSSDDRIMRLKEGYIKEGSTVSVMGVVR 207
           V+PFV P TV +VT  N++LSP+F+ WL+DR LS+DDR+MRLKEGYIKEGSTVSVMG+VR
Sbjct: 338 VSPFVKPATVANVTTQNKDLSPSFLKWLSDRNLSADDRVMRLKEGYIKEGSTVSVMGMVR 397

Query: 208 RHDNVLMIVPSTEPVSTGCQWLRCLLPTYAEGLILTCEDNQNSDVIPV 255
           RHDNVLMIVP  E VS+GC+W  CL PTYA+GLI+TC+DNQN+DVIPV
Sbjct: 398 RHDNVLMIVPPAEAVSSGCRWWHCLFPTYADGLIITCDDNQNADVIPV 445


>AT1G16860.1 | Symbols:  | Ubiquitin-specific protease family
           C19-related protein | chr1:5768280-5770183 FORWARD
           LENGTH=474
          Length = 474

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 147/227 (64%), Positives = 180/227 (79%)

Query: 29  VVVLMIWNCCWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSYQRVPRC 88
           V  L IWN CWGRRG+  F+ RYPDA+LR A +GQ+VKVTGVVTCG++PLESS+ RVPRC
Sbjct: 248 VAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCGNVPLESSFHRVPRC 307

Query: 89  VYVSTELFEYKGLGGTSANPKHRCLSWGSRYSEKYVADFYISDFQTGLRALVKAGYGAKV 148
           VY ST L+EY+G G   AN  HR  +WG R SE++V DFYISDFQ+GLRALVK G GAKV
Sbjct: 308 VYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGSGAKV 367

Query: 149 APFVNPTTVVDVTKGNRELSPNFVGWLADRKLSSDDRIMRLKEGYIKEGSTVSVMGVVRR 208
            P V+ + V+D  +G+ ++SP+FV WL  + L+SDDRIMRLKEGYIKEGSTVSV+GVV+R
Sbjct: 368 TPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYIKEGSTVSVIGVVQR 427

Query: 209 HDNVLMIVPSTEPVSTGCQWLRCLLPTYAEGLILTCEDNQNSDVIPV 255
           +DNVLMIVPS+EP++ G QW RC  PT  EG++L CED+ N D IPV
Sbjct: 428 NDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIPV 474


>AT1G78880.1 | Symbols:  | Ubiquitin-specific protease family
           C19-related protein | chr1:29653068-29654819 REVERSE
           LENGTH=468
          Length = 468

 Score =  307 bits (786), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 142/227 (62%), Positives = 174/227 (76%)

Query: 29  VVVLMIWNCCWGRRGLLGFVKRYPDAELRGAIDGQYVKVTGVVTCGSIPLESSYQRVPRC 88
           V  L IWN    RRG+  F+ RYPDA+LR A +GQYVKVTGVVTCG++PLESS+ RVPRC
Sbjct: 242 VAALFIWNISCERRGITDFIARYPDADLRTAKNGQYVKVTGVVTCGNVPLESSFHRVPRC 301

Query: 89  VYVSTELFEYKGLGGTSANPKHRCLSWGSRYSEKYVADFYISDFQTGLRALVKAGYGAKV 148
           VY ST L+EY+G G   AN  HR  +WG R +E++V DFYISDFQ+GLRALVK G GAKV
Sbjct: 302 VYTSTCLYEYRGWGSKPANASHRRFTWGLRSAERHVVDFYISDFQSGLRALVKTGNGAKV 361

Query: 149 APFVNPTTVVDVTKGNRELSPNFVGWLADRKLSSDDRIMRLKEGYIKEGSTVSVMGVVRR 208
            P V+ + V+D   GN + SP+FV WL  + L++DDRIMRLKEGYIKEGSTVSV+GVV+R
Sbjct: 362 TPLVDDSVVIDFKPGNEQASPDFVRWLGKKNLTNDDRIMRLKEGYIKEGSTVSVIGVVQR 421

Query: 209 HDNVLMIVPSTEPVSTGCQWLRCLLPTYAEGLILTCEDNQNSDVIPV 255
           +DNVLMIVP+TEP++ G QW +C  P   EG++L CED+ N D IPV
Sbjct: 422 NDNVLMIVPTTEPLAAGWQWSKCTFPASLEGIVLRCEDSSNVDAIPV 468