Miyakogusa Predicted Gene
- Lj6g3v1692780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1692780.1 Non Chatacterized Hit- tr|I1LVC4|I1LVC4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26386 PE,85.26,0,ATP
BINDING / DNA BINDING / HELICASE,NULL; SWI/SNF-RELATED
MATRIX-ASSOCIATED ACTIN-DEPENDENT
REGULAT,NODE_70953_length_1154_cov_63.438477.path2.1
(379 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 524 e-149
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 407 e-114
AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:1327... 179 4e-45
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 153 2e-37
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 150 1e-36
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 144 1e-34
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 140 2e-33
AT3G32280.1 | Symbols: | ATP-dependent helicase family protein ... 120 2e-27
AT3G31900.1 | Symbols: | ATP-dependent helicase family protein ... 103 2e-22
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 79 5e-15
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 79 5e-15
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 79 5e-15
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 60 3e-09
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 59 4e-09
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 59 4e-09
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 58 1e-08
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 52 5e-07
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 50 3e-06
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 49 6e-06
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 49 7e-06
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/390 (66%), Positives = 312/390 (80%), Gaps = 15/390 (3%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLE 60
MIISFMQSFL KYP A+PLVVLPKGIL TWKKEF WQVEDIPL DFY+ KA++R+QQL
Sbjct: 386 MIISFMQSFLAKYPQAKPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLS 445
Query: 61 VLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTD 120
+LKQW+E KSILFLGY+QFS+IVCD++T+ S+SCQ+ILLKVPSILILDEGH PRNE+T+
Sbjct: 446 ILKQWMEKKSILFLGYQQFSTIVCDDTTD--SLSCQEILLKVPSILILDEGHTPRNEDTN 503
Query: 121 MVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHS------ 174
++QSLA+V+TPRKVVLSGTLYQNHVKEVFNILNLVRPKFLK++TS+ VKRI +
Sbjct: 504 LLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPCDV 563
Query: 175 RVHISGKKS-----FYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPG 229
R ++G S F + VE TLQK DF KI VIQDLREMT KVLHYYKGDFLDELPG
Sbjct: 564 RGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDELPG 623
Query: 230 LVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKCGENSVSDQMV 289
L DFTV+L L+P+Q +E KL+ RKFKVS++GSA+YLHP+L +DK + VSD +
Sbjct: 624 LADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKLKVFSDKS--DDVSDTTM 681
Query: 290 DDLIEKLDVKDGVKSKFFMNILNLCDSSNEKLLVFSQYLLPLKYLERLVMKWKGWSFGKX 349
D+++EKLD+ +GVK+KFF+N++NLCDS+ EKLLVFSQYL+PLK+LERL KGW GK
Sbjct: 682 DEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLAALAKGWKLGKE 741
Query: 350 XXXXXXXXXXXQREWSMNKFNNSPDAKIFF 379
QREWSM FN+SPDAKIFF
Sbjct: 742 VFVLTGNTSSEQREWSMETFNSSPDAKIFF 771
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/398 (52%), Positives = 282/398 (70%), Gaps = 20/398 (5%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLE 60
++ISF+QSF+ P ARPLVVLPKGI+ +WK+EF W+VE IPL DFY+VKA+SR QQL+
Sbjct: 301 LLISFLQSFMAMDPQARPLVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLK 360
Query: 61 VLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTD 120
VL QW++ +SILFLGY+QF+ I+CD++ + S C+ ILL+ P++LILDEGH RN+ T
Sbjct: 361 VLGQWIKERSILFLGYQQFTRIICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETY 420
Query: 121 MVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHI-S 179
M+ SLA+VKT RKVVL+GTL+QN+V+EVFNIL+LVRPKFLK +R IV RI S+ I
Sbjct: 421 MLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPR 480
Query: 180 GKK----------SFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPG 229
GK+ +F+ VE TLQ+ +F K ++I+DLREMT +LHY+K DF LPG
Sbjct: 481 GKQVNQSSSSIEGTFFAAVELTLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPG 540
Query: 230 LVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADK---CGENSVSD 286
L +FTV+L L+ Q+ E L+ + FK S+G+ALY+HP+L ++ GE SD
Sbjct: 541 LSEFTVMLNLSSIQRDEVKGLRKMEL-FKQISLGAALYIHPKLKSFLEENPSNGEKGFSD 599
Query: 287 Q-----MVDDLIEKLDVKDGVKSKFFMNILNLCDSSNEKLLVFSQYLLPLKYLERLVMKW 341
+D +++K++V+DGVK KFF+N+L LC+S+ EKLLVFSQY++P+K LERL+
Sbjct: 600 NNTTVMKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSM 659
Query: 342 KGWSFGKXXXXXXXXXXXXQREWSMNKFNNSPDAKIFF 379
KGW GK QREWSM +FNNS +AK+FF
Sbjct: 660 KGWRLGKEMFTITGDSSNEQREWSMERFNNSLEAKVFF 697
>AT3G32330.1 | Symbols: | DNA repair protein-related |
chr3:13276082-13277155 FORWARD LENGTH=327
Length = 327
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 168/288 (58%), Gaps = 42/288 (14%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLE 60
++ISF+ +L K+PN++ L VLPK +L+ LE
Sbjct: 59 LMISFIYGYLEKHPNSKSLFVLPKWVLN------------------------------LE 88
Query: 61 VLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTD 120
VLK+W++ SI+FLG KQFS+IV DNS S SC+DILL + S+++ D G +PRNE
Sbjct: 89 VLKRWIKTWSIIFLGAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFDRGTDPRNEMMS 148
Query: 121 MVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHISG 180
++ ++++KTP KV+L+G+LYQN++KEVFNIL++ P+FLK I K +++
Sbjct: 149 FLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPEFLKHNQ---IGKNFRKLLNVEA 205
Query: 181 -------KKSFYDLVEDT-LQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVD 232
K +D +E+ L +D D KI + +L+ +T+KV++ +KG+ L E+PGL+D
Sbjct: 206 DGPSTNLKMPLFDKLEEALLSQDSDHGDKICYLTELKMLTNKVIYNHKGECLLEVPGLMD 265
Query: 233 FTVLLKLTPRQKHE-TGKLKNISRKFKVSSMGSALYLHPRLIPVADKC 279
FTV+LK T QK + K+ + FK S S + LHP L +D+
Sbjct: 266 FTVVLKPTSSQKSAWEVERKSNGKGFKKYSTLSGIMLHPLLCAFSDRA 313
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 199/395 (50%), Gaps = 40/395 (10%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYD--------FYTVKA 52
+ + F+QS+L ++PN+ P+V+ P ++ TW+ E + W V +IP Y+ + +A
Sbjct: 625 LTVVFLQSYLKRFPNSHPMVIAPATLMRTWEDEVRKWNV-NIPFYNMNSLQLSGYEDAEA 683
Query: 53 DSR--------SQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPS 104
SR S ++ L W + KSIL + Y + + + +T + + + +L+++P
Sbjct: 684 VSRLEGNRHHNSIRMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQV-FRRMLVELPG 742
Query: 105 ILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMET 164
+L+LDEGH PRN+++ + + L +V+T +++ LSGTL+QN+ KE+ N+L L RP
Sbjct: 743 LLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPA-----D 797
Query: 165 SRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFL 224
I RIH S + + E+ I DL+ M + +H ++G L
Sbjct: 798 KDTISSRIHELSKCSQEGEHGRVNEENR------------IVDLKAMIAHFVHVHEGTIL 845
Query: 225 DE-LPGLVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKC-GEN 282
E LPGL D V+L +QK ++ F+ SA+ +HP L + E+
Sbjct: 846 QESLPGLRDCVVVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSLYLCCNPTKKED 905
Query: 283 SVSDQMVDDLIEKLDVK--DGVKSKFFMNILNLCDSSNEKLLVFSQYLLPLKYLERLVMK 340
V +++L +K +GVK+KF ++ + + + EK+LV+SQY+ LK + ++
Sbjct: 906 LVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQLIA 965
Query: 341 WKGWSFGKXXXXXXXXXXXXQREWSMNKFNNSPDA 375
W+ G+ R+ ++ F N PD+
Sbjct: 966 ECDWTEGEQILLMHGKVEQRDRQHMIDNF-NKPDS 999
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 214/426 (50%), Gaps = 67/426 (15%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTV---------- 50
+ I F+Q++L +P+ +P+++ P +L TW +EF+ W + IP ++ ++
Sbjct: 872 LTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKWNI-SIPFHNLSSLDFTGKENSAA 930
Query: 51 -------KADSRSQ-QLEVLK--QWVECKSILFLGYKQFSSIVC----DNSTNSISI--- 93
A +RS ++ ++K W++ KSIL + Y + + D T +
Sbjct: 931 LGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDEDKKTKMVREVKP 990
Query: 94 -----SCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEV 148
++IL+ P +L+LDE H PRN+ + + ++L+KV+T ++++LSGT +QN+ E+
Sbjct: 991 DKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLEL 1050
Query: 149 FNILNLVRPKFLKMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDL 208
N+L L RPK+L+ TS +K+ V GKK+ + + + I++L
Sbjct: 1051 CNVLGLARPKYLERLTS--TLKKSGMTVTKRGKKNLGNEINNR------------GIEEL 1096
Query: 209 REMTSKVLHYYKGDFL-DELPGLVDFTVLLKLTPRQKH--------ETGKLKNISRKFKV 259
+ + +H +KG L LPGL + V+L Q+ K KN+ F+
Sbjct: 1097 KAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIEVTHNRKTKNV---FET 1153
Query: 260 SSMGSALYLHPRLIPVADKCGEN---SVSDQMVDDLIE-KLDVKDGVKSKFFMNILNLCD 315
S + +HP L+ K E S+ + ++ L + +LD VK++F M + LC+
Sbjct: 1154 EHKLSLVSVHPSLVSRC-KISEKERLSIDEALLAQLKKVRLDPNQSVKTRFLMEFVELCE 1212
Query: 316 SSNEKLLVFSQYLLPLKY-LERLVMKWKGWSFGKXXXXXXXXXXXXQREWSMNKFNNSPD 374
EK+LVFSQY+ PLK ++ LV ++K W+ G+ QR+ +N+FN+
Sbjct: 1213 VIKEKVLVFSQYIDPLKLIMKHLVSRFK-WNPGEEVLYMHGKLEQKQRQTLINEFNDPKS 1271
Query: 375 -AKIFF 379
AK+F
Sbjct: 1272 KAKVFL 1277
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 191/385 (49%), Gaps = 49/385 (12%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQ-- 58
+II+F+ S+L +P RPLV+ PK L TW KEF W++ +P++ + + S++
Sbjct: 721 LIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIP-VPVHLLHGRRTYCMSKEKT 779
Query: 59 -------------------LEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDIL 99
L+ +++W S+L +GY F +++ ++S + +L
Sbjct: 780 IQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYMAKVL 839
Query: 100 LKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKF 159
+ P +L+LDEGHNPR+ + + ++L KV T +++LSGTL+QN+ E FN L L RPKF
Sbjct: 840 RESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKF 899
Query: 160 L---------KMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLRE 210
+ K +T++ K H + +K F D++ + +R + + LR
Sbjct: 900 VHEVLVELDKKFQTNQAEQKAPH-LLENRARKFFLDIIAKKIDTKVGDER-LQGLNMLRN 957
Query: 211 MTSKVLHYYKGDFL---DELPGLVDFTVLLKLTPRQKHETGKLKNISRKF-----KVSSM 262
MTS + Y+G D LPGL +T+L+ T Q KL+NI + ++ +
Sbjct: 958 MTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELELL 1017
Query: 263 GSALYLHPRLIPVADKCGENSVSDQMVDDLIEKL--DVKDGVKSKFFMNILNLCDSSNEK 320
+ +HP L+ C + ++++ IEKL D K G K F +N++ EK
Sbjct: 1018 ITLAAIHPWLVKTTTCCAKFFNPQELLE--IEKLKHDAKKGSKVMFVLNLVFRV-VKREK 1074
Query: 321 LLVFSQYLLPLKYLERL---VMKWK 342
+L+F + P++ L V +WK
Sbjct: 1075 ILIFCHNIAPIRLFLELFENVFRWK 1099
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 43/408 (10%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLY--------------- 45
+II+F+ S+L +P RPLV+ PK L TW KEF W++ +P++
Sbjct: 726 LIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIP-VPVHLIHGRRTYCTFKQNK 784
Query: 46 --DFYTVKADSRS-----QQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDI 98
F V SR LE +++W S+L +GY F++++ ++S + +
Sbjct: 785 TVQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKYMAKV 844
Query: 99 LLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPK 158
L + P +L+LDEGHNPR+ + + ++L KV T +++LSGTL+QN+ E FN L L RPK
Sbjct: 845 LRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPK 904
Query: 159 FL---------KMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLR 209
F+ K +T+ + K H + +K F D++ + +R + + L+
Sbjct: 905 FIHEVLMELDQKFKTNHGVNKAPH-LLENRARKLFLDIIAKKIDASVGDER-LQGLNMLK 962
Query: 210 EMTSKVLHYYKGDFL---DELPGLVDFTVLLKLTPRQKHETGKLKNISRKF-----KVSS 261
MT+ + Y+G D LPGL +T+++ T Q KL+++ + + +V
Sbjct: 963 NMTNGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVEL 1022
Query: 262 MGSALYLHPRLIPVADKCGENSVSDQMVDDLIEKLDVKDGVKSKFFMNILNLCDSSNEKL 321
+ +HP L+ ++ C + ++ + K D K G K F +N++ EK+
Sbjct: 1023 QITLAAIHPWLVTSSNCCTKFFNPQELSEIGKLKHDAKKGSKVMFVLNLIFRV-VKREKI 1081
Query: 322 LVFSQYLLPLKYLERLVMKWKGWSFGKXXXXXXXXXXXXQREWSMNKF 369
L+F + P++ L W G+ +R ++KF
Sbjct: 1082 LIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGRVIDKF 1129
>AT3G32280.1 | Symbols: | ATP-dependent helicase family protein |
chr3:13233832-13240154 FORWARD LENGTH=474
Length = 474
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 32/159 (20%)
Query: 1 MIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLE 60
++ISF+ +L K+PN++ L VLPK +L+
Sbjct: 348 LMISFIYGYLEKHPNSKSLFVLPKWVLNG------------------------------- 376
Query: 61 VLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTD 120
LK+W++ +SI+FLG KQFS+IV DNS S SC+DILL + S+++ D G +PRNE
Sbjct: 377 -LKRWIKTRSIIFLGAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFDRGTDPRNEMMC 435
Query: 121 MVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKF 159
++ ++++KTP KV+L+G+LY+N++KEVFNI ++ P F
Sbjct: 436 FLKVVSRIKTPHKVLLTGSLYKNNIKEVFNIFDVAFPNF 474
>AT3G31900.1 | Symbols: | ATP-dependent helicase family protein |
chr3:12875071-12877422 FORWARD LENGTH=393
Length = 393
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 22/131 (16%)
Query: 31 KKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNS 90
+K+F +V D+ L DFY+ KA + KQFS+IV DNS
Sbjct: 262 EKKFGELKVNDLVLLDFYSTKASA----------------------KQFSNIVSDNSGAE 299
Query: 91 ISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFN 150
S SC+DILL + S+++ G +PRNE ++ ++++KTP KV+L+G+LYQN++KEVFN
Sbjct: 300 ASDSCRDILLNILSVVVFGRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFN 359
Query: 151 ILNLVRPKFLK 161
IL++ P+FLK
Sbjct: 360 ILDVAFPEFLK 370
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
L+V P +L W+ EF+ W ++ + + SR ++ ++L +W + + +GY
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 79 FSSIVCDNSTNSISIS---CQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVV 135
F ++ ++ + C + L P IL+ DE H +N D Q+L +VK R++
Sbjct: 843 FRNLSLGRGVKDLNAARGIC-NALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIA 901
Query: 136 LSGTLYQNHVKEVFNILNLVRPKFL 160
L+G+ QN++ E + +++ VR FL
Sbjct: 902 LTGSPLQNNLMEYYCMVDFVREGFL 926
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
L+V P +L W+ EF+ W ++ + + SR ++ ++L +W + + +GY
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 79 FSSIVCDNSTNSISIS---CQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVV 135
F ++ ++ + C + L P IL+ DE H +N D Q+L +VK R++
Sbjct: 843 FRNLSLGRGVKDLNAARGIC-NALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIA 901
Query: 136 LSGTLYQNHVKEVFNILNLVRPKFL 160
L+G+ QN++ E + +++ VR FL
Sbjct: 902 LTGSPLQNNLMEYYCMVDFVREGFL 926
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
L+V P +L W+ EF+ W ++ + + SR ++ ++L +W + + +GY
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 79 FSSIVCDNSTNSISIS---CQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVV 135
F ++ ++ + C + L P IL+ DE H +N D Q+L +VK R++
Sbjct: 843 FRNLSLGRGVKDLNAARGIC-NALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIA 901
Query: 136 LSGTLYQNHVKEVFNILNLVRPKFL 160
L+G+ QN++ E + +++ VR FL
Sbjct: 902 LTGSPLQNNLMEYYCMVDFVREGFL 926
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
L+V P +L W+ EF+ W ++ + + SR + F +
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRYK---------------FFYERN 827
Query: 79 FSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSG 138
F + N+ I + +D P IL+ DE H +N D Q+L +VK R++ L+G
Sbjct: 828 FWGVKDLNAARGICNALRD----GPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTG 883
Query: 139 TLYQNHVKEVFNILNLVRPKFL 160
+ QN++ E + +++ VR FL
Sbjct: 884 SPLQNNLMEYYCMVDFVREGFL 905
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 5 FMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQ 64
Q F G + ++V P ++S W+ E + W + I L D ++ +
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTR 288
Query: 65 WVECKSILFLGYKQF---SSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDM 121
+L + Y+ F SS C S SC +LI DE H +N+ T
Sbjct: 289 PRSALQVLIISYETFRMHSSKFCQ------SESCD--------LLICDEAHRLKNDQTLT 334
Query: 122 VQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFL 160
++LA + R+V+LSGT QN ++E F ++N P L
Sbjct: 335 NRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSL 373
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 5 FMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQ 64
Q F G + ++V P ++S W+ E + W + I L D ++ +
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTR 288
Query: 65 WVECKSILFLGYKQF---SSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDM 121
+L + Y+ F SS C S SC +LI DE H +N+ T
Sbjct: 289 PRSALQVLIISYETFRMHSSKFCQ------SESC--------DLLICDEAHRLKNDQTLT 334
Query: 122 VQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFL 160
++LA + R+V+LSGT QN ++E F ++N P L
Sbjct: 335 NRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSL 373
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 14/164 (8%)
Query: 2 IISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEV 61
I SF+ R LVV PK +L W KE T + + ++Y +R L
Sbjct: 412 ICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLSQM-TREYYGTSTKAREYDLHH 470
Query: 62 LKQWVECKSILFLGYKQFSSIVCDNSTNSIS-----ISCQDILLKVPSILILDEGHNPRN 116
+ ++ K IL Y + N+T ++ D +ILDEGH +N
Sbjct: 471 I---LQGKGILLTTYD-----IVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKN 522
Query: 117 ENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFL 160
NT +SL ++ + ++++SGT QN++KE++ + N P L
Sbjct: 523 PNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLL 566
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 35/172 (20%)
Query: 3 ISFMQSFLGKYPNARP-----------LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVK 51
I+F+ + GK +A L++ P I+ W+ EF W +
Sbjct: 175 IAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRW----ASFFKVSVYH 230
Query: 52 ADSRSQQLEVLK-QWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPS--ILIL 108
+R LE LK + VE +L + F Q +L + I+I
Sbjct: 231 GSNRDMILEKLKARGVE---VLVTSFDTFR--------------IQGPVLSGINWEIVIA 273
Query: 109 DEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFL 160
DE H +NE + + ++ ++KT +++ L+GT+ QN + E+FN+ V P L
Sbjct: 274 DEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSL 325
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
L+V PK +L W EF TW V I + + D R ++ + +++ + + +
Sbjct: 456 LIVAPKAVLPNWVNEFATW-VPSIAAFLY-----DGRLEERKAIREKIAGEGKFNVLITH 509
Query: 79 FSSIVCDNSTNSISISCQDILLKVP-SILILDEGHNPRNENTDMVQS-LAKVKTPRKVVL 136
+ I+ D + L K+ +I+DEGH +N + + ++ L + R+++L
Sbjct: 510 YDLIMRDKA----------FLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLL 559
Query: 137 SGTLYQNHVKEVFNILNLVRP 157
+GT QN ++E++++LN + P
Sbjct: 560 TGTPIQNSLQELWSLLNFLLP 580
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 19 LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQ 78
LVV+P L+ W KEF+ W +P + S+++ C+ F K+
Sbjct: 678 LVVVPLSTLANWAKEFRKW----LPGMNIIVYVGTRASREV--------CQQYEFYNEKK 725
Query: 79 FSSIVCDNS---TNSISISCQDILLKVPSI-LILDEGHNPRNENTDMVQSLAKVKTPRKV 134
+ N+ T + + + +L K+ I L++DE H +N + +L + T K+
Sbjct: 726 VGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKL 785
Query: 135 VLSGTLYQNHVKEVFNILNLVRPKFLK 161
+++GT QN V+E++ +L+ + P K
Sbjct: 786 LITGTPLQNSVEELWALLHFLDPGKFK 812
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 142/352 (40%), Gaps = 60/352 (17%)
Query: 4 SFMQSFLGKYPNARP-LVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVL 62
+F+ S ++ ARP LV++P + W EF W PL + ++ + +
Sbjct: 726 AFLSSLYFEFGVARPCLVLVPLSTMPNWLSEFSLW----APLLNVVEYHGSAKGRAIIRD 781
Query: 63 KQWVECKSILFL----GYKQFSSIVCDNSTNSISISCQDILLKVP-SILILDEGHNPRNE 117
+W S YK F+ ++ +T + ++ L VP +L++DEGH +N
Sbjct: 782 YEWHAKNSTGTTKKPTSYK-FNVLL---TTYEMVLADSSHLRGVPWEVLVVDEGHRLKNS 837
Query: 118 NTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVH 177
+ + L +V+L+GT QN++ E++N+LN ++
Sbjct: 838 ESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNF--------------LQPSSFPSL 883
Query: 178 ISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLL 237
S ++ F+DL + +K + K+ +A +L K D + +P + V +
Sbjct: 884 SSFEERFHDLT--SAEKVEELKKLVA---------PHMLRRLKKDAMQNIPPKTERMVPV 932
Query: 238 KLTPRQKHETGK--------LKNISRKFKVSSMGSALYL------HPRLIPVADKCGENS 283
+LT Q L+NI + SM + + HP LIP G
Sbjct: 933 ELTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIP-----GTEP 987
Query: 284 VSDQMVDDLIEKLDVKDGVKSKFFMNILNLCDSSNEKLLVFSQYLLPLKYLE 335
S + + + + +K K ++L + ++L+FSQ L LE
Sbjct: 988 ESGSL--EFLHDMRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILE 1037