Miyakogusa Predicted Gene

Lj6g3v1589740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1589740.1 Non Chatacterized Hit- tr|C0PD23|C0PD23_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,57.83,2e-19,seg,NULL,CUFF.59639.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30620.2 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossman...   100   2e-22
AT1G30620.1 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossman...   100   2e-22
AT1G30620.3 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossman...    96   5e-21
AT4G20460.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...    94   2e-20
AT5G44480.1 | Symbols: DUR | NAD(P)-binding Rossmann-fold superf...    59   8e-10

>AT1G30620.2 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding
          Rossmann-fold superfamily protein |
          chr1:10855496-10857970 FORWARD LENGTH=419
          Length = 419

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 57/88 (64%)

Query: 1  MLNFARSRSQPRATSAMSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKXXXXXXX 60
          M +F R+RSQ R   +MSLGG+DY DPK+K N  GK+ L A LTALCI ++K+       
Sbjct: 1  MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60

Query: 61 XXXXXXXXGVTHVLVTGGAGYIGSHACF 88
                  GVTHVLVTGGAGYIGSHA  
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAAL 88


>AT1G30620.1 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding
          Rossmann-fold superfamily protein |
          chr1:10855496-10857970 FORWARD LENGTH=419
          Length = 419

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 57/88 (64%)

Query: 1  MLNFARSRSQPRATSAMSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKXXXXXXX 60
          M +F R+RSQ R   +MSLGG+DY DPK+K N  GK+ L A LTALCI ++K+       
Sbjct: 1  MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTP 60

Query: 61 XXXXXXXXGVTHVLVTGGAGYIGSHACF 88
                  GVTHVLVTGGAGYIGSHA  
Sbjct: 61 SVFSRHEPGVTHVLVTGGAGYIGSHAAL 88


>AT1G30620.3 | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding
          Rossmann-fold superfamily protein |
          chr1:10855496-10857970 FORWARD LENGTH=418
          Length = 418

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 1  MLNFARSRSQPRATSAMSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKXXXXXXX 60
          M +F R+RSQ R   +MSLGG+DY DPK+K N  GK+ L A LTALCI ++K+       
Sbjct: 1  MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQ-SPTFNT 59

Query: 61 XXXXXXXXGVTHVLVTGGAGYIGSHA 86
                  GVTHVLVTGGAGYIGSHA
Sbjct: 60 PSFSRHEPGVTHVLVTGGAGYIGSHA 85


>AT4G20460.1 | Symbols:  | NAD(P)-binding Rossmann-fold
          superfamily protein | chr4:11029767-11031765 REVERSE
          LENGTH=411
          Length = 411

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 1  MLNFARSRSQPRATSAMSLGGMDYVDPKRKGNVAGKVFLVAVLTALCILIIKKXXXXXXX 60
          ML+F+R+RSQ R T  +  GGM+Y++PKRK NV GK+ LV  LTALCI ++K        
Sbjct: 1  MLSFSRARSQGRNTRPLG-GGMEYLEPKRKSNVMGKIILVVSLTALCIFMLKHAPSFTSP 59

Query: 61 XXXXXXXXGVTHVLVTGGAGYIGSHACF 88
                  GVTHVLVTGGAGYIGSHA  
Sbjct: 60 TAFSRSEEGVTHVLVTGGAGYIGSHAAL 87


>AT5G44480.1 | Symbols: DUR | NAD(P)-binding Rossmann-fold
           superfamily protein | chr5:17921515-17923643 FORWARD
           LENGTH=436
          Length = 436

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 24/110 (21%)

Query: 1   MLNFARSRSQPRATSAMSLGG------------------------MDYVDPKRKGNVAGK 36
           MLN +  R+Q R+   +SLGG                        MD ++PK K N+ GK
Sbjct: 1   MLNSSGVRTQRRSPRPLSLGGRKIITPTKFAYDHHNPDKVLDFVEMDCLEPKTKNNLTGK 60

Query: 37  VFLVAVLTALCILIIKKXXXXXXXXXXXXXXXGVTHVLVTGGAGYIGSHA 86
           + LVA L  L I++I +               GVTHVLVTGGAGYIGSHA
Sbjct: 61  LLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGGAGYIGSHA 110