Miyakogusa Predicted Gene

Lj6g3v1525960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1525960.1 CUFF.59580.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49320.1 | Symbols:  | Protein of unknown function (DUF1218) ...   255   2e-68

>AT5G49320.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr5:19995083-19996214 REVERSE LENGTH=257
          Length = 257

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 169/253 (66%), Gaps = 13/253 (5%)

Query: 2   AVTHADLEPSRGKTDLSSKTGAXXXXXXXXXXXXXXXXXXXAEATRSEVTWVNTGGKEKG 61
           AVTH DL P+   TDLSSKTG                    AEATRS+ TW        G
Sbjct: 8   AVTHQDLVPNPKTTDLSSKTGIFIAVLTIIFGLSCFVLCLYAEATRSQATW--------G 59

Query: 62  AKSECVYDGNGKVPLLCAASAFIGLAIAMVVEHTYMLIAVSKSKPSLL--NWDPDSPSAK 119
           +K+ CVY+G+GK PLLC A AF+GLA+AMV  H Y+LIAV+ S PSL+   WDPDS  AK
Sbjct: 60  SKT-CVYNGSGKTPLLCGAIAFVGLAVAMVGFHMYLLIAVTTS-PSLVLVEWDPDSVPAK 117

Query: 120 SLIWQAGFFFITTWICFAVAEILLLAALSVESGHLKNWYKPKTICYSIREGLFASAGVFA 179
            L +QA FFF++TW+CF V E+LLL ALSVESGHLKNW KPK  C  IR+GLF++AGVF+
Sbjct: 118 RLTFQAAFFFVSTWVCFGVGEVLLLVALSVESGHLKNWSKPKPSCLVIRQGLFSAAGVFS 177

Query: 180 LTTVFLAAGLYLTALRTQRMLEELAIVRREVLETSSFYSSPPRSPQRHIAAVARENPTTT 239
           L TVFLA GLYLTAL+  R+ ++L    RE++E S  Y+SPPRSP   +A VARE   T 
Sbjct: 178 LITVFLATGLYLTALQAHRISKDLENTHREIIEASVLYASPPRSPTNRMATVAREGLATV 237

Query: 240 TRESQN-ELLLSV 251
             ES + E L+S+
Sbjct: 238 RDESTSLEYLVSL 250