Miyakogusa Predicted Gene

Lj6g3v1412750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1412750.1 NODE_36402_length_1593_cov_8.804143.path2.1
         (494 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily prot...   570   e-163
AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily prot...   570   e-163
AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein ...   381   e-106

>AT4G20050.2 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score =  570 bits (1469), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/492 (59%), Positives = 358/492 (72%), Gaps = 20/492 (4%)

Query: 3   RKPSLVLSLFLWVSCFIVIGA-YGEKNLPHMTISGGKHHVAIQRLQSFKASLTRHDSIAX 61
           RK  + + +FL +   +V    + EK+   M+     H  A+  +Q+ KASL R +  A 
Sbjct: 4   RKSQVAMPVFLAIMSLMVSQVVFAEKDSGSMS----PHDRALAEMQALKASLVRRNLPAL 59

Query: 62  XXXXXXXXXXXXXXXXXXXXXGVNNPRVYHVTSYGADPSGNSDSTEXXXXXXXXXXKGPS 121
                                 V  PRVY V SYGADP+G  DST+           GP+
Sbjct: 60  VSPPPTPPQ------------AVPGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPN 107

Query: 122 EGRLIEGIKNLGGAQVNLEGGNYLISKSLQLPVAGVGNLMIHGGTIRASNNFPADGYIID 181
            G L++GI +LGGA+++L+GG+YLIS+ L+ P AG GNL+I GGT+RASN+FP D Y+I+
Sbjct: 108 HGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIE 167

Query: 182 LSASPSS-SYNFEYITLKDLLLDSNFRGGGISVINSLRTSIDNCYITHF-TTNGILVQSG 239
           L    S   Y FEYITL+DLL+D N+RGG I+VINSLRTSIDNCYIT F  TNGILV+SG
Sbjct: 168 LKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSG 227

Query: 240 HETYIRNSFLGQHITAGGDKHERNFSGTGINIQGNDNAVTDVVIFSAAIGIMVTGQANTF 299
           HETYIRNSFLGQHITAGGD+ ER+FSGT IN+ GNDNAVTD VIFSA IG+MV+GQAN  
Sbjct: 228 HETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLL 287

Query: 300 SGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANI 359
           SGVHCYNKATGFGGTGIYL+LPGLTQ RIVNSY+DYT IVAEDPVQL IS +FFLGDA I
Sbjct: 288 SGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFI 347

Query: 360 VLKSMKGVVNGVTIVDNMFSGSNKEVEIVHLDQSNSGFNQVDQVIVNRNIVRGMKLKATV 419
           +LKS+ G + GV+IVDNMFSGS   V+IV LDQ N+ F+ V QV+V+RN V GM  K+TV
Sbjct: 348 LLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTV 407

Query: 420 AKKSMQGNGTSWSVDFNDVLLFPNLIKNVQYSL-SSTGSTFPNHALRNVSENRVVIETNE 478
           A+ S+ GNGTSW+VDFN VLLFP+LI +VQY+L +S    FP HALRNVS+NRVV+ETN 
Sbjct: 408 ARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNA 467

Query: 479 AVSANVFITVDQ 490
            V+  V++TV+Q
Sbjct: 468 PVTGTVYVTVNQ 479


>AT4G20050.1 | Symbols: QRT3 | Pectin lyase-like superfamily protein
           | chr4:10849911-10852090 REVERSE LENGTH=481
          Length = 481

 Score =  570 bits (1469), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/492 (59%), Positives = 358/492 (72%), Gaps = 20/492 (4%)

Query: 3   RKPSLVLSLFLWVSCFIVIGA-YGEKNLPHMTISGGKHHVAIQRLQSFKASLTRHDSIAX 61
           RK  + + +FL +   +V    + EK+   M+     H  A+  +Q+ KASL R +  A 
Sbjct: 4   RKSQVAMPVFLAIMSLMVSQVVFAEKDSGSMS----PHDRALAEMQALKASLVRRNLPAL 59

Query: 62  XXXXXXXXXXXXXXXXXXXXXGVNNPRVYHVTSYGADPSGNSDSTEXXXXXXXXXXKGPS 121
                                 V  PRVY V SYGADP+G  DST+           GP+
Sbjct: 60  VSPPPTPPQ------------AVPGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPN 107

Query: 122 EGRLIEGIKNLGGAQVNLEGGNYLISKSLQLPVAGVGNLMIHGGTIRASNNFPADGYIID 181
            G L++GI +LGGA+++L+GG+YLIS+ L+ P AG GNL+I GGT+RASN+FP D Y+I+
Sbjct: 108 HGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIE 167

Query: 182 LSASPSS-SYNFEYITLKDLLLDSNFRGGGISVINSLRTSIDNCYITHF-TTNGILVQSG 239
           L    S   Y FEYITL+DLL+D N+RGG I+VINSLRTSIDNCYIT F  TNGILV+SG
Sbjct: 168 LKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSG 227

Query: 240 HETYIRNSFLGQHITAGGDKHERNFSGTGINIQGNDNAVTDVVIFSAAIGIMVTGQANTF 299
           HETYIRNSFLGQHITAGGD+ ER+FSGT IN+ GNDNAVTD VIFSA IG+MV+GQAN  
Sbjct: 228 HETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLL 287

Query: 300 SGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANI 359
           SGVHCYNKATGFGGTGIYL+LPGLTQ RIVNSY+DYT IVAEDPVQL IS +FFLGDA I
Sbjct: 288 SGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFI 347

Query: 360 VLKSMKGVVNGVTIVDNMFSGSNKEVEIVHLDQSNSGFNQVDQVIVNRNIVRGMKLKATV 419
           +LKS+ G + GV+IVDNMFSGS   V+IV LDQ N+ F+ V QV+V+RN V GM  K+TV
Sbjct: 348 LLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTV 407

Query: 420 AKKSMQGNGTSWSVDFNDVLLFPNLIKNVQYSL-SSTGSTFPNHALRNVSENRVVIETNE 478
           A+ S+ GNGTSW+VDFN VLLFP+LI +VQY+L +S    FP HALRNVS+NRVV+ETN 
Sbjct: 408 ARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNA 467

Query: 479 AVSANVFITVDQ 490
            V+  V++TV+Q
Sbjct: 468 PVTGTVYVTVNQ 479


>AT4G20040.1 | Symbols:  | Pectin lyase-like superfamily protein |
           chr4:10847348-10848963 REVERSE LENGTH=483
          Length = 483

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 272/423 (64%), Gaps = 26/423 (6%)

Query: 88  RVYHVTSYGADPSGNSDSTEXXXXXXXXXXKGPSEGRLIEGIKNLGGAQVNLEGGNYLIS 147
           +V +   YGADP+G  DS++          +  +   ++  + +LGG  ++L+GG+Y+I 
Sbjct: 67  KVIYPIGYGADPTGGQDSSDAILEALTDAFQLQTGLEMLPRVADLGGLVIDLQGGSYMIG 126

Query: 148 KSLQLPVAGVGNLMIHGGTIRASNNFPADGYIIDLSAS---------PSSSYN------- 191
           K L+ P +G GNL++ GGT RAS  FP D ++++L AS         P  S++       
Sbjct: 127 KPLRFPSSGGGNLVVKGGTFRASELFPGDRHLVELVASNAKKPMKMSPEESFSDQKDQSS 186

Query: 192 ---FEYITLKDLLLDSNFRGGGISVINSLRTSIDNCYITHFTTNGILVQSGHETYIRNSF 248
              +E +T +D+L DS FRGGGI VI+S R  I NCY  HFTT GI VQ GHETYI NSF
Sbjct: 187 GIFYEDVTFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHETYISNSF 246

Query: 249 LGQHITAGGDKHERNFSGTGINIQGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKA 308
           LGQH T GGD+ ER F+GTGI+I  NDNA+TDVVIFSA IGI + G AN  +GVHCYNKA
Sbjct: 247 LGQHSTVGGDREERGFTGTGIDISSNDNAITDVVIFSAGIGISLNGGANMVTGVHCYNKA 306

Query: 309 TGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMKGVV 368
           T FGG GI +K      TRI N Y+DYT IV EDPV +H++++ FLGDANIVL+S+ G +
Sbjct: 307 TWFGGIGILVK---SHLTRIDNCYLDYTGIVIEDPVHVHVTNALFLGDANIVLRSVHGKI 363

Query: 369 NGVTIVDNMFSGSNK-EVEIVHLDQSNSGFNQVDQVIVNRNIVRGMKLKATVAKKSMQGN 427
           +GV IV+NMFSG+ K    IV L+     F+ ++QV++++N   GM LK+T  K  +  N
Sbjct: 364 SGVNIVNNMFSGTAKNNFPIVKLEGE---FHDINQVVIDQNNAEGMMLKSTTGKAMVSAN 420

Query: 428 GTSWSVDFNDVLLFPNLIKNVQYSLSSTGSTFPNHALRNVSENRVVIETNEAVSANVFIT 487
           GT W  DF+ VL+FPN I + Q+S  +     P +A+ NVS N VV+ET+ AV+  V I 
Sbjct: 421 GTRWIADFSPVLVFPNRINHYQHSFFAQSGQIPANAVTNVSNNMVVVETDRAVTGTVSII 480

Query: 488 VDQ 490
             Q
Sbjct: 481 AYQ 483