Miyakogusa Predicted Gene

Lj6g3v1201450.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1201450.2 Non Chatacterized Hit- tr|I3SFU1|I3SFU1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.64,0,CHARGED
MULTIVESICULAR BODY PROTEIN 2A (CHROMATIN-MODIFYING PROTEIN
2A)(CHMP2A)(VACUOLAR PROTEIN-SOR,CUFF.59247.2
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...   322   1e-88
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...   131   4e-31
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   121   3e-28
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   105   3e-23
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...    63   2e-10
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sortin...    53   2e-07

>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/222 (75%), Positives = 179/222 (80%), Gaps = 1/222 (0%)

Query: 1   MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVR 60
           M+ IFGKRKTPAELLRENKRMLDKSIREIERERQGLQ QEKKLI EIKK+AKQGQMGAV+
Sbjct: 2   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query: 61  VMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 120
           VMAKDL+RTRHQ+EKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP
Sbjct: 62  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query: 121 SLQKIMQEFERQNEKMELTTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQELL 180
           SLQKIMQEFERQNEKME+ +EVM                    V+QVLDEIGI++NQEL+
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query: 181 NXXXXXXXXXXXXTKVPQVE-TAATDDGGIDSDLQARLDNLR 221
           N             KV Q E T A D GGIDSDLQARLDNLR
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223


>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 109/176 (61%)

Query: 4   IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMA 63
           IF K+  P E+LRE+KR + ++ R IE+E   LQ++EKKL+LEIK++AK G  GA +++A
Sbjct: 3   IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62

Query: 64  KDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 123
           + L+R R Q+      ++Q++G++   Q + +  ++   M+G TKAM  M++ M+     
Sbjct: 63  RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122

Query: 124 KIMQEFERQNEKMELTTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 179
           K+M+EF++Q+ +M++TTE+M                     NQVLDEIGI++  +L
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178


>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 103/176 (58%)

Query: 4   IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMA 63
           IF K+ TP + LR +KR +  + R IERE   LQ +EK+L+ EIKK+AK G   A +++A
Sbjct: 3   IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62

Query: 64  KDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 123
           + LVR R Q+      ++Q++GV+   Q L ++ ++   MKG TKAM  MN+QM      
Sbjct: 63  RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQA 122

Query: 124 KIMQEFERQNEKMELTTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 179
           K++++F++Q+ ++++T E+M                     NQVLDEIG+ V  +L
Sbjct: 123 KVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%)

Query: 25  SIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQ 84
           + R IERE   LQ +EK+L+ EIKK+AK G   A +++A+ LVR R Q+      ++Q++
Sbjct: 4   ATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIR 63

Query: 85  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMX 144
           GV+   Q L ++ ++   MKG TKAM  MN+QM      K++++F++Q+ ++++T E+M 
Sbjct: 64  GVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMS 123

Query: 145 XXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 179
                               NQVLDEIG+ V  +L
Sbjct: 124 EAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 158


>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 4   IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMA 63
           I   +  P +LLR+ +R L +  R IER+ + +Q +E+ +   IK++AK+  M + + +A
Sbjct: 7   IIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALA 66

Query: 64  KDLVRTRHQVEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 122
           K++V +R  V + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +
Sbjct: 67  KEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQM 125

Query: 123 QKIMQEFERQ 132
              MQEF ++
Sbjct: 126 AATMQEFSKE 135


>AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
           46.1 | chr1:6099210-6100153 FORWARD LENGTH=203
          Length = 203

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%)

Query: 27  REIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGV 86
           + ++R+ +  + +E+   L++KK+ ++G M   R+ A++ +R R +   + +L S+L  V
Sbjct: 19  KSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAV 78

Query: 87  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMXXX 146
             R+ T      + ++M  + K++       NL  + + M  FE+Q   ME+  E M   
Sbjct: 79  VARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNA 138

Query: 147 XXXXXXXXXXXXXXXXXVNQVLDEIGINVN 176
                            + QV D+ G+ V+
Sbjct: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168