Miyakogusa Predicted Gene
- Lj6g3v1187500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1187500.1 tr|Q9FMW7|Q9FMW7_ARATH AT5g23340/MKD15_20
OS=Arabidopsis thaliana GN=At5g23340 PE=2
SV=1,33.05,8e-18,Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing subtype;
GB DE,CUFF.59220.1
(728 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-ri... 520 e-147
AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:72... 269 5e-72
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 98 2e-20
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 80 6e-15
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 67 3e-11
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21... 67 5e-11
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 66 1e-10
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 66 1e-10
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 54 5e-07
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 52 1e-06
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 52 1e-06
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 50 5e-06
AT2G36370.1 | Symbols: | ubiquitin-protein ligases | chr2:15247... 49 9e-06
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 49 9e-06
AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein | c... 49 9e-06
>AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich
repeat, cysteine-containing subtype
(InterPro:IPR006553); BEST Arabidopsis thaliana protein
match is: RNI-like superfamily protein
(TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins
in 240 species: Archae - 0; Bacteria - 125; Metazoa -
2326; Fungi - 765; Plants - 1373; Viruses - 0; Other
Eukaryotes - 439 (source: NCBI BLink). |
chr2:2352333-2355419 REVERSE LENGTH=762
Length = 762
Score = 520 bits (1340), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/487 (52%), Positives = 340/487 (69%), Gaps = 10/487 (2%)
Query: 222 ERFRDIARENASRFAHFASXXXXXXXXRSSVXXXXXXXXXDWPGPFSTAIRIIRDRENKG 281
+ FRDIA A RFAHF + DWPGPFSTA++II+DRE
Sbjct: 283 QHFRDIAERIAHRFAHFDAQVEEEEDLSDK---EGEQQVEDWPGPFSTAMKIIKDREEYT 339
Query: 282 DIQTGFAASSQASLIDSIKWVPRTTSSEEREDATARFNVPSLQEMCLQILSRNVDAIVSL 341
G S++ +I WVPR+ S A PSLQE+ L++L +N DAI SL
Sbjct: 340 TPHVGIGVSNKERSSPTI-WVPRSNFSFPPRKA------PSLQELSLRVLVKNADAITSL 392
Query: 342 ESVPDALRHRLSHLLCDSRRINDHFLELLVGGAPTEIRLRDCSWLSEEHFTKCFQTCDTT 401
+ VPD LR +L LLCDSRR++ HFL+LLV G+PTEI + DCSWL+EE FT+CF+ CDT+
Sbjct: 393 DYVPDTLRVKLCQLLCDSRRMDLHFLDLLVQGSPTEICVPDCSWLTEEEFTECFKNCDTS 452
Query: 402 NLLVLQLDQCGRSLADYVIVATLAQSPRQLPRLVSLSVSGACRLSNVGLRALISSAPEXX 461
NL+VLQLDQCGR + DY++ TLA+SP+ LP L +LS+SGACRLS+VGLR L+SSAP
Sbjct: 453 NLMVLQLDQCGRCMPDYILPFTLARSPKVLPMLSTLSISGACRLSDVGLRQLVSSAPAIT 512
Query: 462 XXXXXXXXXXXXXXIDIIAESLKSVLKELYLDDCQGMSAALVVPALVKLEHLEVLSVAGI 521
ID++++SL SVL+ELY+++CQ + ++ AL K E LEVLS+A +
Sbjct: 513 SINLNQCSLLTSSSIDMLSDSLGSVLRELYINECQNIDMKHILAALKKFEKLEVLSLADL 572
Query: 522 QTFSDKILKDYIIARGHNLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLS 581
+ + LK+++ ARG LK+L+L L+D SIKVI+E+CP L VLDL N+ KLTD S
Sbjct: 573 PSVKGRFLKEFVTARGQTLKQLILTNSRKLSDSSIKVISENCPNLSVLDLANVCKLTDSS 632
Query: 582 IGYLTKGCRSLHTLKLCRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHA 641
+GYL GC++L L CRNPFSDEA+ AFVET+G SLKELSLNN+KKVG++TA++LA+H+
Sbjct: 633 LGYLANGCQALEKLIFCRNPFSDEAVAAFVETAGGSLKELSLNNVKKVGHNTALALAKHS 692
Query: 642 KNLHTLDLSWCRNLSDNALGFIVDSCLSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKM 701
L LD+SWCR +S++ LG+IVD+ SLK+LK+FGC+QVTDVFVKGHSN ++I+G+KM
Sbjct: 693 DKLQILDISWCREMSNDLLGYIVDNSSSLKVLKVFGCSQVTDVFVKGHSNPNVKILGVKM 752
Query: 702 SPVLQHV 708
P L H+
Sbjct: 753 DPFLGHL 759
>AT5G21900.1 | Symbols: | RNI-like superfamily protein |
chr5:7238239-7240338 FORWARD LENGTH=544
Length = 544
Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/414 (38%), Positives = 231/414 (55%), Gaps = 1/414 (0%)
Query: 305 TTSSEEREDATARFNVPSLQEMCLQILSRNVDAIVSLESVPDALRHRLSHLLCDSRRIND 364
+T+S+ D R PSL E+ ++L++N AI SL+ VPD LR +LS+L+ +
Sbjct: 128 STTSDMEIDLNVRRKAPSLVELSARVLAQNFLAIKSLKLVPDHLRKKLSYLVSGLGEFDT 187
Query: 365 HFLELLVGGAPTEIRLRDCSWLSEEHFTKCFQTCDTTNLLVLQLDQCGRSLADYVIVATL 424
+ELL+ +P+EI ++C L E+ K F CD +L VL LD CGRS+ DY I
Sbjct: 188 RLMELLIEDSPSEICAKNCVQLVEDDLVKIFCDCDRVSLKVLILDLCGRSMTDYTINQFF 247
Query: 425 AQSPRQLPRLVSLSVSGACRLSNVGLRALISSAPEXXXXXXXXXXXXXXXXIDIIAESLK 484
++P P L +LS+ GA L++ L + S+P + I+A+
Sbjct: 248 KRAPNGFPSLTTLSLQGAFCLTDNALLLISKSSPLLQYINLTECSLLTYRALRILADKFG 307
Query: 485 SVLKELYLDDCQGMSAAL-VVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKEL 543
S L+ L + CQG+ +L K E L LSVAG+ + +D +++ + + R L +L
Sbjct: 308 STLRGLSIGGCQGIKKHKGFSSSLYKFEKLNYLSVAGLVSVNDGVVRSFFMFRSSILTDL 367
Query: 544 VLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCRNPFS 603
L C +TD + I +C L LD+ +L KLTD S+ ++T+GCR L +LKL N FS
Sbjct: 368 SLANCNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSLKLTSNRFS 427
Query: 604 DEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFI 663
DE I AF+E SG SL+EL LN ++ VG TA SLA+ K L LDLSWCR L ++ L I
Sbjct: 428 DECIAAFLEVSGGSLRELCLNKVRDVGPETAFSLAKVCKMLQFLDLSWCRRLKEDDLRRI 487
Query: 664 VDSCLSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKMSPVLQHVKVPDPHQAA 717
+ C SL+ LKLFG TQV D +++ S + I GLK++ + H+ P A
Sbjct: 488 LRCCSSLQSLKLFGWTQVEDTYLEELSRSDVHITGLKLTSLYAHLDNFYPSVGA 541
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 478 IIAESLKSVLKELYLDDCQGMSAALVVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARG 537
+I+E K L+ L L +C+G++ + L L+ L V+ + SDK L +A G
Sbjct: 92 VISEGFK-FLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLS--AVAEG 148
Query: 538 -HNLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLK 596
H+L+ L L GC +TD S+K ++E C L L L +TD + L KGCR + +L
Sbjct: 149 CHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLD 208
Query: 597 L--CRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRN 654
+ C N D + + + SLK L L + KVG + SLA+ KNL TL + CR+
Sbjct: 209 INKCSN-VGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRD 267
Query: 655 LSDNALGFIVDSCL-SLKLLKLFGCTQVTD----VFVKGHSNMQIQIIG 698
+SD ++ + DSC SLK L++ C ++D +K N++ IG
Sbjct: 268 ISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIG 316
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 3/199 (1%)
Query: 487 LKELYLDDCQGMSAALVVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKELVLK 546
L L L C +LV+ + K L+ L++ + + + I H L+EL L
Sbjct: 66 LTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLS 125
Query: 547 GCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCR--NPFSD 604
+ +TDRS+ +A CP L L+L +D +I YLT+ CR L L LC +D
Sbjct: 126 KSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTD 185
Query: 605 EAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIV 664
A+ A + + ++ L+L + + +SLA +L TLDL C ++D ++ +
Sbjct: 186 NALEA-IGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALA 244
Query: 665 DSCLSLKLLKLFGCTQVTD 683
D C+ L+ L L+ C +TD
Sbjct: 245 DWCVHLRSLGLYYCRNITD 263
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 513 LEVLSVAGIQTFSDK----------ILKD------YII------ARGHNLKELV---LKG 547
LE L++ Q F+DK LKD Y + A H KEL + G
Sbjct: 296 LERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEING 355
Query: 548 CINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCRNPFSDEAI 607
C N+ R I+ I + CP L L L+ ++ + ++ + KGC+SL L L +
Sbjct: 356 CHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIA 415
Query: 608 GAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSC 667
+ +LK+L + ++G IS+ +H K+L L L +C + + AL I C
Sbjct: 416 MCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC 475
Query: 668 LSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKMSPVLQHV 708
SL+ L + GC Q++D + + Q+ L +S VLQ++
Sbjct: 476 -SLQQLNVSGCNQISDAGITAIARGCPQLTHLDIS-VLQNI 514
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 9/257 (3%)
Query: 433 RLVSLSVSGACRLSNVGLRALISSAPEXXXXXXXXXXXXXXXXIDIIAESLKSVLKELYL 492
+L L++S +S GL A+ E I+ I +S LKEL L
Sbjct: 321 KLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPR-LKELAL 379
Query: 493 DDCQGMSAALVVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARG-HNLKELVLKGCINL 551
CQ + + + + LE+L + D + IA+G NLK+L ++ C +
Sbjct: 380 LYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCS--IAKGCRNLKKLHIRRCYEI 437
Query: 552 TDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKL--CRNPFSDEAIGA 609
++ I I +HC L L L K+ + ++ + KGC SL L + C N SD I A
Sbjct: 438 GNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC-SLQQLNVSGC-NQISDAGITA 495
Query: 610 FVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSCLS 669
+ L L ++ ++ +G L L L LS C +++DN L +V C
Sbjct: 496 IARGCPQ-LTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKL 554
Query: 670 LKLLKLFGCTQVTDVFV 686
L+ + C +T V
Sbjct: 555 LETCHMVYCPGITSAGV 571
>AT3G58530.1 | Symbols: | RNI-like superfamily protein |
chr3:21645759-21648219 FORWARD LENGTH=353
Length = 353
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 487 LKELYLDDCQGMSAALVVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKELVLK 546
L+ L L+ CQ +S + L+V S+ +D +++ ++ ++ +L L
Sbjct: 113 LEWLNLNVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRN-LVKNCRHITDLNLS 171
Query: 547 GCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKL-CRNPFSDE 605
GC +LTD+S++++AE P L L++ K+TD + + + C SL TL L + F+D+
Sbjct: 172 GCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDK 231
Query: 606 AIGAFVETSGES-LKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIV 664
A+++ S + L+ L + + + +A+ K L +L+L+WC ++D + I
Sbjct: 232 ---AYMKISLLADLRFLDICGAQNISDEGIGHIAKCNK-LESLNLTWCVRITDAGVNTIA 287
Query: 665 DSCLSLKLLKLFGCTQVTD 683
+SC SL+ L LFG VTD
Sbjct: 288 NSCTSLEFLSLFGIVGVTD 306
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 487 LKELYLDDCQGMSAALVV---PALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKEL 543
L L L C+ +LV+ P VKL+ L VL Q + + + I H L++L
Sbjct: 66 LTRLSLSWCKKNMNSLVLSLAPKFVKLQTL-VLRQDKPQLEDNAV--EAIANHCHELQDL 122
Query: 544 VLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCR--NP 601
L +TD S+ +A C L L+L +D ++ +LT+ CR L L LC
Sbjct: 123 DLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEA 182
Query: 602 FSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALG 661
SD + A E + L+ L+L + + +SLA +L TLDL C ++D ++
Sbjct: 183 VSDNTLQAIGENCNQ-LQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVV 241
Query: 662 FIVDSCLSLKLLKLFGCTQVTD 683
+ + C+ L+ L L+ C +TD
Sbjct: 242 ALANRCIHLRSLGLYYCRNITD 263
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 551 LTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKL--CRNPFSDEAIG 608
L D +++ IA HC L LDL K+TD S+ L +GC +L L L C FSD A+
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGC-TSFSDTAL- 161
Query: 609 AFVETSGESLKELSLNN-IKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSC 667
A + LK L+L ++ V +T ++ + L +L+L WC N+SD+ + + C
Sbjct: 162 AHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGC 221
Query: 668 LSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKM 701
L+ L L C +TD V +N I + L +
Sbjct: 222 PDLRTLDLCSCVLITDESVVALANRCIHLRSLGL 255
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 21/193 (10%)
Query: 524 FSDKILKDYIIARGHNLKELVLKGCINLTD-RSIKVIAEHCPGLCVLDLMNLGKLTDLSI 582
F + ++ +I+ ++ +L +NL D R++ + + C G D ++LG LT LS+
Sbjct: 15 FENMKMEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGW--RDAVSLG-LTRLSL 71
Query: 583 GYLTKGCRSL-----------HTLKLCRNP--FSDEAIGAFVETSGESLKELSLNNIKKV 629
+ K SL TL L ++ D A+ A E L++L L+ K+
Sbjct: 72 SWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHE-LQDLDLSKSSKI 130
Query: 630 GYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSCLSLKLLKLFGCTQ-VTDVFVK- 687
H+ SLAR NL L+LS C + SD AL + C LK+L L GC + V+D ++
Sbjct: 131 TDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQA 190
Query: 688 -GHSNMQIQIIGL 699
G + Q+Q + L
Sbjct: 191 IGENCNQLQSLNL 203
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 487 LKELYLDDCQGMSAALVV---PALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKEL 543
L L L C+ +LV+ P VKL+ L VL Q + + + I H L++L
Sbjct: 66 LTRLSLSWCKKNMNSLVLSLAPKFVKLQTL-VLRQDKPQLEDNAV--EAIANHCHELQDL 122
Query: 544 VLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCR--NP 601
L +TD S+ +A C L L+L +D ++ +LT+ CR L L LC
Sbjct: 123 DLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEA 182
Query: 602 FSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALG 661
SD + A E + L+ L+L + + +SLA +L TLDL C ++D ++
Sbjct: 183 VSDNTLQAIGENCNQ-LQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVV 241
Query: 662 FIVDSCLSLKLLKLFGCTQVTD 683
+ + C+ L+ L L+ C +TD
Sbjct: 242 ALANRCIHLRSLGLYYCRNITD 263
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 551 LTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKL--CRNPFSDEAIG 608
L D +++ IA HC L LDL K+TD S+ L +GC +L L L C FSD A+
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGC-TSFSDTAL- 161
Query: 609 AFVETSGESLKELSLNN-IKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSC 667
A + LK L+L ++ V +T ++ + L +L+L WC N+SD+ + + C
Sbjct: 162 AHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGC 221
Query: 668 LSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKM 701
L+ L L C +TD V +N I + L +
Sbjct: 222 PDLRTLDLCSCVLITDESVVALANRCIHLRSLGL 255
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 21/193 (10%)
Query: 524 FSDKILKDYIIARGHNLKELVLKGCINLTD-RSIKVIAEHCPGLCVLDLMNLGKLTDLSI 582
F + ++ +I+ ++ +L +NL D R++ + + C G D ++LG LT LS+
Sbjct: 15 FENMKMEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGW--RDAVSLG-LTRLSL 71
Query: 583 GYLTKGCRSL-----------HTLKLCRNP--FSDEAIGAFVETSGESLKELSLNNIKKV 629
+ K SL TL L ++ D A+ A E L++L L+ K+
Sbjct: 72 SWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHE-LQDLDLSKSSKI 130
Query: 630 GYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIVDSCLSLKLLKLFGCTQ-VTDVFVK- 687
H+ SLAR NL L+LS C + SD AL + C LK+L L GC + V+D ++
Sbjct: 131 TDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQA 190
Query: 688 -GHSNMQIQIIGL 699
G + Q+Q + L
Sbjct: 191 IGENCNQLQSLNL 203
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 532 YIIARGHNLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRS 591
Y R NL+ L +K C N+TD S++ IA +CP L LD+ +T S+ L + C++
Sbjct: 118 YAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQN 177
Query: 592 LHTLKLCRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSW 651
L LK RN +G + T L L+ + G A + ++ L L++ +
Sbjct: 178 LKILK--RNLLP--RLGPSLPTIVAPLDYLA--TFPRYGNIEARIIGKYMTQLKHLEIRY 231
Query: 652 CRNLSDNALGFIVDSCLSLKLLKLFGCTQVT----DVFVKGHSNMQIQIIGLKMSPVLQH 707
L+ L + C +L+ + L GC +T + G N+ +II +P +
Sbjct: 232 -STLTARGLDSVCKGCSNLEYMDLRGCISLTRSDINTNTSGLKNLT-EIIKPDFNPPIAV 289
Query: 708 VKVPDP 713
++VP P
Sbjct: 290 LRVPRP 295
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 8/219 (3%)
Query: 487 LKELYLDDCQGMSAALVVPALVKL-EHLEVLSVAGIQTFSDKILKDYIIARGH--NLKEL 543
L+ L L++C ++ +L+ E L+ S+ + S + L + A H L+ L
Sbjct: 389 LESLQLEECHRVTQFGFFGSLLNCGEKLKAFSL--VNCLSIRDLTTGLPASSHCSALRSL 446
Query: 544 VLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCRNPFS 603
++ C D ++ I + CP L +DL L +T+ +L + C N +
Sbjct: 447 SIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQSSLVKINFSGCSN-LT 505
Query: 604 DEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFI 663
D I A +G +L+ L+++ + + +S+A + + L LD+S C +SD+ + +
Sbjct: 506 DRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCA-ISDSGIQAL 564
Query: 664 VDS-CLSLKLLKLFGCTQVTDVFVKGHSNMQIQIIGLKM 701
S L L++L + GC+ VTD + + ++GL +
Sbjct: 565 ASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNL 603
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 480 AESLKSVLKELYLDDCQGMSAALVVPALVKL-EHLEVLSVAGIQTFSDKILKDYIIARGH 538
A S S L+ L + +C G A + A+ KL LE + + G++ ++ I +
Sbjct: 436 ASSHCSALRSLSIRNCPGFGDA-NLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQS--- 491
Query: 539 NLKELVLKGCINLTDRSIKVI-AEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKL 597
+L ++ GC NLTDR I I A + L VL++ +TD S+ + C+ L L +
Sbjct: 492 SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDI 551
Query: 598 CRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSD 657
+ SD I A + L+ LS+ V + ++ L L+L CR++S+
Sbjct: 552 SKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISN 611
Query: 658 NALGFIVD 665
+ + F+V+
Sbjct: 612 STVDFLVE 619
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 72/299 (24%)
Query: 427 SPRQLPRLVSLSVSGACRLSNVGLRALISSAPEXXXXXXXXXXXXXXXXIDIIAESLKSV 486
+ + L +L SLSV +++VGL A+ + P+
Sbjct: 320 NAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPD--------------------------- 352
Query: 487 LKELYLDDC---QGMSAALVVPALVKLEHLEVLSVAGIQTFSDKILKDYIIARGHNLKEL 543
LK + L+ C G + + + LE L++ I F L +++ G LK
Sbjct: 353 LKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQFG---LMGFLMNCGSKLKAF 409
Query: 544 VLKGCINLTD---------------RSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKG 588
L C+ ++D RS+ + CPG D S+ +L K
Sbjct: 410 SLANCLGISDFNSESSLPSPSCSSLRSLSI--RCCPGF-----------GDASLAFLGKF 456
Query: 589 CRSLHTLKLCR-NPFSDEAIGAFVETSGESLKELSLNNIKKVGYHT--AISLARHAKNLH 645
C L ++LC N +D + ++++ L +++L+ V +T AIS+ H + L
Sbjct: 457 CHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVC-HGRTLE 515
Query: 646 TLDLSWCRNLSDNALGFIVDSCLSLKLLKLFGCTQVTDVFVKG------HSNMQIQIIG 698
+L+L C+N+++ +L + +C S+ L + T V+D +K H N+Q+ IG
Sbjct: 516 SLNLDGCKNITNASLVAVAKNCYSVNDLDISN-TLVSDHGIKALASSPNHLNLQVLSIG 573
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 551 LTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCRNP-FSDEAIGA 609
+TD + +A CP L ++ L NL ++DL + + + C + L L R P +D + A
Sbjct: 154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVA 213
Query: 610 FVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIV 664
E +L +L++++ VG ++AR NL ++ + C + D + F++
Sbjct: 214 IAENC-VNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLL 267
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 532 YIIARGHNLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRS 591
Y R NL+ L ++ N+TD S+ IA C L LD+ +++ ++ + + C +
Sbjct: 106 YAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPN 165
Query: 592 LHTLKLCRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTLDLSW 651
L LK +S IG S+ L+ + G A ++ +H NL L++ +
Sbjct: 166 LRILKRNLMDWSSRHIG--------SVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQF 217
Query: 652 CRNLSDNALGFIVDSCLSLKLLKLFGCTQVT 682
R LS L I + C L+ L LFGC ++
Sbjct: 218 SR-LSVKGLASICEGCPKLEYLDLFGCVHLS 247
>AT2G36370.1 | Symbols: | ubiquitin-protein ligases |
chr2:15247894-15252800 FORWARD LENGTH=898
Length = 898
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 532 YIIARGH----NLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTK 587
+ +GH ++ L L+G ++ D ++ I+ C LC L++ L+D I + +
Sbjct: 404 FYSGQGHCLLSSITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQ 463
Query: 588 GCRSLHTLKLCRNPFSDEAIGAFVETSGESLKELSLNNIKKVGYHTAISLARHAKNLHTL 647
C+ L +L +C FS+ +I A T + + + +N++ A NL TL
Sbjct: 464 RCKKLCSLIVCYTSFSENSILALCATISMTNEHMDINSV--------------ASNLQTL 509
Query: 648 DLSWCRNLSDNAL 660
+S C +S+ +L
Sbjct: 510 HMSKCEGISETSL 522
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 542 ELVLKGCINLTDRSIKVIAEHCPGLCVLDLMNLGKLTDLSIGYLTKGCRSLHTLKLCRNP 601
E+ L C+++TD + +A +C L L+L G +TD++I + + CR+L TLKL
Sbjct: 329 EIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKL---- 384
Query: 602 FSDEAIGAFVETSGESL-------KELSLNNIKKVGYHTAISLARHAKNLHTLDLSWCRN 654
E+ E +SL +EL L + V + NL L L C N
Sbjct: 385 ---ESCHLITEKGLQSLGCYSMLVQELDLTDCYGVN-DRGLEYISKCSNLQRLKLGLCTN 440
Query: 655 LSDNALGFIVDSCLSLKLLKLFGCTQVTD 683
+SD + I C L L L+ C D
Sbjct: 441 ISDKGIFHIGSKCSKLLELDLYRCAGFGD 469
>AT2G17020.1 | Symbols: | F-box/RNI-like superfamily protein |
chr2:7396559-7398787 REVERSE LENGTH=656
Length = 656
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 516 LSVAGIQTFSDKILKDYII---ARGHNLKELVLKGCINLTDRSIKVIAEHCPGLCVLDLM 572
LS++ + +L D+ I A L+ L L+GC NL D ++ ++ H P L VL L+
Sbjct: 378 LSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCRNLRDETLTAVS-HLPKLKVL-LL 435
Query: 573 NLGKLTDLSIGYLTKGC-RSLHTLKL--CRNPFSDEAIGAFVETSGE-SLKELSLNNIKK 628
+ ++D + YL +G SL +L + CRN +D+ + + S + +L+EL L+N+
Sbjct: 436 DGADISDTGLSYLKEGVLDSLVSLSVRGCRN-LTDKFMSTLFDGSSKLALRELDLSNLPN 494
Query: 629 VGYHTAISLARHAKNLHTLDLSWCRNLSDNALGFIV------DSC--LSLKLLKLFGCTQ 680
+ +LA+ + L L CR + D ++ + D C SL LL L+ C
Sbjct: 495 LTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGG 554
Query: 681 VTDVFVK 687
+T + K
Sbjct: 555 ITQLSFK 561