Miyakogusa Predicted Gene
- Lj6g3v1187500.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v1187500.1 tr|Q9FMW7|Q9FMW7_ARATH AT5g23340/MKD15_20
OS=Arabidopsis thaliana GN=At5g23340 PE=2
SV=1,33.05,8e-18,Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing subtype;
GB DE,CUFF.59220.1
(2187 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS343876 similar to UniRef100_Q9LJG1 Cluster: Similarit... 682 0.0
gnl|LJGI|TC76343 homologue to UniRef100_A2Q4Q8 Cluster: Zinc fin... 58 2e-07
gnl|LJGI|FS330822 weakly similar to UniRef100_A7PR97 Cluster: Ch... 56 1e-06
>gnl|LJGI|FS343876 similar to UniRef100_Q9LJG1 Cluster: Similarity to terminal ear1;
n=2; Arabidopsis thaliana|Rep: Similarity to terminal
ear1 - Arabidopsis thaliana (Mouse-ear cress), partial
(3%)
Length = 503
Score = 682 bits (344), Expect = 0.0
Identities = 380/398 (95%)
Strand = Plus / Plus
Query: 1 atgggtcgaaccaaaaccaccgcaaaacccgaccccctcaccgaacccgcttctcccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atgggtcgaaccaaaaccaccgcaaaacccgaccccctcaccgaacccgcttctcccctt 165
Query: 61 tcccttcctccgccgcttcgcagacggagcctccgcctctcacccgctcccaattccgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tcccttcctccgccgcttcgcagacggagcctccgcctctcacccgctcccaattccgaa 225
Query: 121 cctcccgccgccactagggtttccaccgccaaggggaagaaaaaccccaaaacgatgtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cctcccgccgccactagggtttccaccgccaaggggaagaaaaaccccaaaacgatgtcg 285
Query: 181 tctaacggcgatgaagatggtaataaaattggaaagggttttctcaacttgcgttctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tctaacggcgatgaagatggtaataaaattggaaagggttttctcaacttgcgttctggc 345
Query: 241 aagaaggttctcaagcgaggagaaaccaccaccacaaccaccaccgccgccnnnnnnnnn 300
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagaaggttctcaagcgaggagaaaccaccaccacaaccaccaccgccgccgatgatgat 405
Query: 301 nnnnnnnnntcactgggaagcagtaagaaaaggaaaatcgaagaagaggaacaaaccgat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gatgatgattcactgggaagcagtaagaaaaggaaaatcgaagaagaggaacaaaccgat 465
Query: 361 gaagggggaaatgacgagttaaccgccgggaagagtca 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaagggggaaatgacgagttaaccgccgggaagagtca 503
>gnl|LJGI|TC76343 homologue to UniRef100_A2Q4Q8 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (46%)
Length = 546
Score = 58.0 bits (29), Expect = 2e-07
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 407 atgaaggtgaaggagaaggagaaggagaa 435
|||||||||||||||||||||||||||||
Sbjct: 121 atgaaggtgaaggagaaggagaaggagaa 93
>gnl|LJGI|FS330822 weakly similar to UniRef100_A7PR97 Cluster: Chromosome chr14
scaffold_26, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_26, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 777
Score = 56.0 bits (28), Expect = 1e-06
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 409 gaaggtgaaggagaaggagaaggagaat 436
||||||||||||||||||||||||||||
Sbjct: 87 gaaggtgaaggagaaggagaaggagaat 60