Miyakogusa Predicted Gene

Lj6g3v1139640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1139640.1 tr|A4S674|A4S674_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,24.15,1e-18,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Transmembrane protein 135,CUFF.59143.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34630.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   613   e-176
AT1G34630.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   465   e-131
AT5G51150.1 | Symbols:  | Mitochondrial import inner membrane tr...   126   3e-29

>AT1G34630.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Mitochondrial import inner membrane translocase
           subunit Tim17/Tim22/Tim23 family protein
           (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins
           in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95;
           Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes
           - 45 (source: NCBI BLink). | chr1:12685317-12687435
           FORWARD LENGTH=481
          Length = 481

 Score =  613 bits (1581), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 289/368 (78%), Positives = 328/368 (89%)

Query: 17  SNSEAIVTALKETLRYGLFLGTFAGTFVSMDELIAAVGGHRRTGKWRAMLAGAVAGHSML 76
           SNSEAI   +KETLRYGLFLGTFAGTFVS+DE IAA+ G +RT KWRA+ AG VAG SML
Sbjct: 102 SNSEAIAMGIKETLRYGLFLGTFAGTFVSVDEAIAALAGDKRTAKWRALFAGLVAGPSML 161

Query: 77  LTGLEAQHTSLAIYILMRAAVLASRCGIKSERFGRICKPLTWKHGDIFLMCLSSSQILSA 136
           LTG   QHTSLA+YILMRAAVLASRCGIKS+RFG ICKPLTWKHGD+FLMCLSSSQILSA
Sbjct: 162 LTGPNTQHTSLAVYILMRAAVLASRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSA 221

Query: 137 YILKQESLPASYKSFLNKHGGKDPVILQGVKDIASGKPFTNLDAIEKYYKTVGVDVKLDP 196
           YILKQESLP+SYKSFLNK GGKD  ILQGVKDIA+ +PFTNL AIEKYYK+VGVD+KLDP
Sbjct: 222 YILKQESLPSSYKSFLNKQGGKDLSILQGVKDIATAQPFTNLRAIEKYYKSVGVDIKLDP 281

Query: 197 NMKVPCSIVHGNQSCGGHVLSFLLQAYKRALPVYLPVYLIPALIVHRKGLLQRPNTILAK 256
            MKVPC+I+HGN+SC  H ++F LQAYKRALPVY+PVYLIPALIVHR+ LL++  +IL K
Sbjct: 282 TMKVPCTIIHGNESCVKHGVTFFLQAYKRALPVYVPVYLIPALIVHRQDLLKKQYSILGK 341

Query: 257 GLVGTARSSLFLSVYCTSAWMWTCFLFRIFRRCNVPMVAMGTFPTGLALAIEKKSRRIEI 316
           GL+GTARSSLFL+ YC+SAW WTC LFR F  CN+P+VA+ TFPTGLALAIEKKSRRIEI
Sbjct: 342 GLLGTARSSLFLATYCSSAWAWTCLLFRTFETCNIPLVAIATFPTGLALAIEKKSRRIEI 401

Query: 317 SLYCLARAIESFFTCIADAGYLPQSRRIKRADVMVFSLSTAIIMHCYAQEREVFKSKYLN 376
           SLYCLARAIESFFTC+ +AGY+   + ++RADV+VFS+STAIIMHCYAQER+VF+SKYLN
Sbjct: 402 SLYCLARAIESFFTCMTEAGYIRPPKSLRRADVVVFSVSTAIIMHCYAQERDVFRSKYLN 461

Query: 377 VLDWVFGV 384
           VLDWVFGV
Sbjct: 462 VLDWVFGV 469


>AT1G34630.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is: Mitochondrial
           import inner membrane translocase subunit
           Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr1:12685317-12687107
           FORWARD LENGTH=395
          Length = 395

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 248/285 (87%)

Query: 17  SNSEAIVTALKETLRYGLFLGTFAGTFVSMDELIAAVGGHRRTGKWRAMLAGAVAGHSML 76
           SNSEAI   +KETLRYGLFLGTFAGTFVS+DE IAA+ G +RT KWRA+ AG VAG SML
Sbjct: 102 SNSEAIAMGIKETLRYGLFLGTFAGTFVSVDEAIAALAGDKRTAKWRALFAGLVAGPSML 161

Query: 77  LTGLEAQHTSLAIYILMRAAVLASRCGIKSERFGRICKPLTWKHGDIFLMCLSSSQILSA 136
           LTG   QHTSLA+YILMRAAVLASRCGIKS+RFG ICKPLTWKHGD+FLMCLSSSQILSA
Sbjct: 162 LTGPNTQHTSLAVYILMRAAVLASRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSA 221

Query: 137 YILKQESLPASYKSFLNKHGGKDPVILQGVKDIASGKPFTNLDAIEKYYKTVGVDVKLDP 196
           YILKQESLP+SYKSFLNK GGKD  ILQGVKDIA+ +PFTNL AIEKYYK+VGVD+KLDP
Sbjct: 222 YILKQESLPSSYKSFLNKQGGKDLSILQGVKDIATAQPFTNLRAIEKYYKSVGVDIKLDP 281

Query: 197 NMKVPCSIVHGNQSCGGHVLSFLLQAYKRALPVYLPVYLIPALIVHRKGLLQRPNTILAK 256
            MKVPC+I+HGN+SC  H ++F LQAYKRALPVY+PVYLIPALIVHR+ LL++  +IL K
Sbjct: 282 TMKVPCTIIHGNESCVKHGVTFFLQAYKRALPVYVPVYLIPALIVHRQDLLKKQYSILGK 341

Query: 257 GLVGTARSSLFLSVYCTSAWMWTCFLFRIFRRCNVPMVAMGTFPT 301
           GL+GTARSSLFL+ YC+SAW WTC LFR F  CN+P+VA+ T  T
Sbjct: 342 GLLGTARSSLFLATYCSSAWAWTCLLFRTFETCNIPLVAIATVQT 386


>AT5G51150.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr5:20789034-20791495 FORWARD LENGTH=531
          Length = 531

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 28/365 (7%)

Query: 8   SLFRKEIVVSNSEAIVTALKETLRYGLFLGTFAGTFVSMDELIAAVGGHRRTGKWR---- 63
           SL   + +VS  + IV   +E  R GL  G F G++ ++   +          KWR    
Sbjct: 109 SLLDLKQLVSEKDLIVR--EEACRIGLLFGGFTGSYHALRCCLR---------KWRKKET 157

Query: 64  ---AMLAGAVAGHSMLLTGLEAQHTSLAIYILMRAAVLASRCGIKSERFGRICKPLTWKH 120
              ++LAG+VAG S+L      Q  +LA+Y+L R    A        +F        W+H
Sbjct: 158 PLNSVLAGSVAGLSILALDDSNQRRTLALYLLARLGQAAYNSAKSKNKFHLWGS--HWRH 215

Query: 121 GDIFLMCLSSSQILSAYILKQESLPASYKSFLNKHGGKDPVILQGVKDIASGKPFTNLDA 180
           GD  L  L+ +Q++ ++I++ E+LP SY+ F+ K G     + Q V++   G P  ++ +
Sbjct: 216 GDSLLFSLACAQVMYSFIMRPETLPKSYREFIQKTGPVARPVYQAVRECCRGGPI-DVAS 274

Query: 181 IEKYY--KTVGVDVKLDPNMK-VPCSIVHGN-QSCGGHVLSFLLQAYKRALPVYLPVYLI 236
           +  Y   K    DVK++     +PC+ +H N  SC     + +   +K+  P+Y  +  +
Sbjct: 275 LSAYISSKNEASDVKVEEFASIIPCAAIHPNTNSCLAQNANAMSATFKKTFPLYFSLTFV 334

Query: 237 PALIVHRKGLLQRPNTILAKGLVGTARSSLFLSVYCTSAWMWTCFLFRIFRRCNVPMVAM 296
           P +++H +  +  P       +  + RS+ FLS +      + C   ++  + +  +   
Sbjct: 335 PYVVLHLQKFMASPYRTSWLAIRDSVRSTSFLSAFVGIFQAFICAHRKVATKDHKLVYWF 394

Query: 297 GTFPTGLALAIEKKSRRIEISLYCLARAIESFFTCIADAGYLPQSRRIKRADVMVFSLST 356
                 L++ +EKK RR E++LY L RA +S +  + +   LP    IK A+V +F    
Sbjct: 395 AGGAAALSVMLEKKPRRSELALYVLPRAGDSLWEILVNRHLLPD---IKNAEVALFCGCM 451

Query: 357 AIIMH 361
             IM+
Sbjct: 452 GGIMY 456