Miyakogusa Predicted Gene

Lj6g3v1116230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1116230.1 Non Chatacterized Hit- tr|H3GZ14|H3GZ14_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,30.51,8e-19,GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN
(SNAP-GAMMA),NULL; SOLUBLE NSF ATTACHMENT PROTEIN (SNAP),NSF
at,CUFF.59113.1
         (295 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20410.1 | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF att...   441   e-124

>AT4G20410.1 | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF
           attachment protein | chr4:11014099-11016454 REVERSE
           LENGTH=291
          Length = 291

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/277 (74%), Positives = 244/277 (88%)

Query: 3   ASDPNKLIAKADKLTRLSLTRWNADWRNATVLYEQAANGFRLAKDYEKAKIAFEKASKGQ 62
           +SDP+K+++KADK+T+L+LTRW+ADWR AT LYEQAANGFR +  YEKAK+A EKASKGQ
Sbjct: 2   SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQ 61

Query: 63  EMLSSPWDAAKHMESAAALAKELSNWREAADFYRKASELYMECDRPQPASDALGKGARAL 122
           EM +SPWDAAKHMESAAALA++LS W E ADFYRKASELY+EC R QPASDALGK ARAL
Sbjct: 62  EMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARAL 121

Query: 123 EDAMPEEAVQLYADACTILEEDGKEQMTFDLYRAASSVYIKLEKYTDAASVMLNLGLAAD 182
           ED  P++A+QLY DAC ILEEDG++QM FDLYRA ++VYIKLEK+TDAA+  L LG+AAD
Sbjct: 122 EDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAAD 181

Query: 183 KCNATNSQCKAYLGAIIIYLYAHDFKQAQKCYNDCSQIDAFLSSDQSRCASKFLAAYTDG 242
           KC+ATNSQCKAYL AII+YLYAHD +QA+KCYNDCSQIDAFL SDQSR AS+ L AY +G
Sbjct: 182 KCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEG 241

Query: 243 DVEEIKRIAQSSAVSHLDHVIIKLARKLPTGDVSGFK 279
           D+EEIK++A +S VS+LDH+IIKLARKLPTGDV+  +
Sbjct: 242 DIEEIKKVASASTVSNLDHMIIKLARKLPTGDVTAIQ 278