Miyakogusa Predicted Gene

Lj6g3v0960480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0960480.1 tr|C1MGZ5|C1MGZ5_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4999,32.84,2e-16,ZF_RING_1,Zinc finger, RING-type,
conserved site; zf-RING_2,Zinc finger, RING-type; seg,NULL; no
des,CUFF.58790.1
         (258 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12310.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   214   5e-56
AT5G19430.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   207   8e-54
AT5G19430.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   199   2e-51

>AT5G12310.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:3980485-3982093 REVERSE LENGTH=254
          Length = 254

 Score =  214 bits (545), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 130/199 (65%), Gaps = 7/199 (3%)

Query: 1   MTSSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQ 60
           M+SS+  + +E+QV    D   L  +D   EK + +  ++  FGNHGG CAICLD I LQ
Sbjct: 1   MSSSIQIVVEEKQV----DVLPLQDQD---EKKTPQVFNELSFGNHGGCCAICLDTIPLQ 53

Query: 61  ETALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCL 120
           ETA+VKGCEHAYCVTCILRWA+Y  K TCPQCK PF+FLNVHR+LDGS+ED+MFEESVCL
Sbjct: 54  ETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCL 113

Query: 121 LLRAKWFKPLTVEDHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWG 180
           LLRA WF+PL   + V  +                              SS R+GNRRWG
Sbjct: 114 LLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLDEFYMQGSSLRLGNRRWG 173

Query: 181 DNGYVRAGRQEARPVHRSN 199
           DNG+VRAGRQEARPV   N
Sbjct: 174 DNGFVRAGRQEARPVQHKN 192


>AT5G19430.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6553998-6555616 FORWARD LENGTH=255
          Length = 255

 Score =  207 bits (526), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/260 (44%), Positives = 140/260 (53%), Gaps = 10/260 (3%)

Query: 3   SSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQET 62
           SS+ +I  E+QV+      DL++++   +K   EE H+  FGNHGG CAICL +I LQET
Sbjct: 2   SSVTEIVSEQQVI--DGIQDLALQNQ-DKKKIQEEIHEPSFGNHGGCCAICLSEIPLQET 58

Query: 63  ALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLL 122
           A+VKGCEH YCVTCILRWA+     TCPQCK+PF+FL+VHR+LDGSIED++FEESVCLLL
Sbjct: 59  AMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLL 118

Query: 123 RAKWFKPLTVEDHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWGDN 182
           RA WF PL V +                                   SS RIGNRRWG N
Sbjct: 119 RASWFVPLDVVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLH---GSSLRIGNRRWGGN 175

Query: 183 GYVRAGRQEARPVHRSNTDNXXXXXXXXXXRQPXXXXXXXXXXTTGXXXXXX----XXXX 238
           G+VR+GRQEARPV R +                          TTG              
Sbjct: 176 GFVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANK 235

Query: 239 XXXXXXXXXHQQHLIRLGRK 258
                    H+ HL+RLGRK
Sbjct: 236 AAEVTAAAKHEAHLVRLGRK 255


>AT5G19430.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:6554213-6555616 FORWARD LENGTH=240
          Length = 240

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/249 (44%), Positives = 129/249 (51%), Gaps = 15/249 (6%)

Query: 14  VVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQETALVKGCEHAYC 73
           + L H+  D        +K   EE H+  FGNHGG CAICL +I LQETA+VKGCEH YC
Sbjct: 3   LALLHNIRD--------KKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYC 54

Query: 74  VTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLLRAKWFKPLTVE 133
           VTCILRWA+     TCPQCK+PF+FL+VHR+LDGSIED++FEESVCLLLRA WF PL V 
Sbjct: 55  VTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVV 114

Query: 134 DHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWGDNGYVRAGRQEAR 193
           +                                   SS RIGNRRWG NG+VR+GRQEAR
Sbjct: 115 EQASYSHGYHDDFDIPYDYEDEDDDLDEFYLH---GSSLRIGNRRWGGNGFVRSGRQEAR 171

Query: 194 PVHRSNTDNXXXXXXXXXXRQPXXXXXXXXXXTTGXXXXXX----XXXXXXXXXXXXXHQ 249
           PV R +                          TTG                       H+
Sbjct: 172 PVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHE 231

Query: 250 QHLIRLGRK 258
            HL+RLGRK
Sbjct: 232 AHLVRLGRK 240