Miyakogusa Predicted Gene

Lj6g3v0933780.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0933780.1 Non Chatacterized Hit- tr|E0CTZ6|E0CTZ6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,83.39,0,MatE,Multi antimicrobial extrusion protein; MATE EFFLUX
FAMILY PROTEIN,NULL; MULTIDRUG RESISTANCE PR,CUFF.58679.1
         (882 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS318265 similar to UniRef100_A7Q9Z0 Cluster: Chromosom...    58   1e-07
gnl|LJGI|FS320482 similar to UniRef100_A7Q9Z0 Cluster: Chromosom...    58   1e-07

>gnl|LJGI|FS318265 similar to UniRef100_A7Q9Z0 Cluster: Chromosome chr8 scaffold_68,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_68, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (42%)
          Length = 772

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 110 tggggatggcaagtgcagtgcaaactgtgtgtgggcaagcatatggggc 158
           |||| |||||||||||| || ||||| | ||||||||||||||||||||
Sbjct: 329 tgggcatggcaagtgcactggaaactctatgtgggcaagcatatggggc 377


>gnl|LJGI|FS320482 similar to UniRef100_A7Q9Z0 Cluster: Chromosome chr8 scaffold_68,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_68, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (27%)
          Length = 735

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 110 tggggatggcaagtgcagtgcaaactgtgtgtgggcaagcatatggggc 158
           |||| |||||||||||| || ||||| | ||||||||||||||||||||
Sbjct: 392 tgggcatggcaagtgcactggaaactctatgtgggcaagcatatggggc 440