Miyakogusa Predicted Gene

Lj6g3v0352750.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0352750.2 tr|Q9LMD3|Q9LMD3_ARATH F14D16.9 OS=Arabidopsis
thaliana GN=Clgn PE=4 SV=1,87.76,8e-18,FAMILY NOT NAMED,NULL; DDT,DDT
domain,CUFF.57728.2
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC | chr4:44406871...   449   e-126
Medtr3g108410.1 | hypothetical protein | HC | chr3:50101068-5010...   202   2e-52

>Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC |
           chr4:44406871-44399957 | 20130731
          Length = 755

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 206/239 (86%), Positives = 227/239 (94%)

Query: 1   MWEFASVLNFLHLFRPLLNISVEFSAEEFETALLTPNDTLSDVHMPLLKAIPPITRMALS 60
           MWE ASVLNFL+LFRPLLNIS+EFSAEEFETALL PNDTL  +HMPLLKAIPPITR+AL+
Sbjct: 127 MWELASVLNFLNLFRPLLNISLEFSAEEFETALLNPNDTLFYIHMPLLKAIPPITRVALT 186

Query: 61  RDTWITVLCRKLRDWWHWVAEGDIPVVASHGAEIDVYKSLDPGVRVIILKALCDIRVEQE 120
           RDTWITVLCRKLRDWWHWVAEGD+P+VAS GAEI+VYKSLDP VRVIILKALCDIRVEQE
Sbjct: 187 RDTWITVLCRKLRDWWHWVAEGDLPIVASQGAEIEVYKSLDPAVRVIILKALCDIRVEQE 246

Query: 121 DIRSYIDNSVKHGVQLSTFRKERVGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQLKKG 180
           DIR++IDNSVKHGVQLSTFRKER+GGDS+G+S+WYEDDP+IGHRLYREIRKTEV+Q +KG
Sbjct: 247 DIRNFIDNSVKHGVQLSTFRKERIGGDSNGISYWYEDDPVIGHRLYREIRKTEVIQPRKG 306

Query: 181 KPRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRMEVSVGKKIKIDMLPEVEIVH 239
           + RGSQVLSNT+YQWE VATNFDEFQDVSEKLFSSKNR E SVGKK+KIDMLPE+E VH
Sbjct: 307 RARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTETSVGKKLKIDMLPEIEKVH 365


>Medtr3g108410.1 | hypothetical protein | HC |
           chr3:50101068-50105833 | 20130731
          Length = 458

 Score =  202 bits (515), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/236 (45%), Positives = 155/236 (65%), Gaps = 5/236 (2%)

Query: 2   WEFASVLNFLHLFRPLLNISVEFSAEEFETALLTPNDTLSDVHMPLLKAIPPITRMALSR 61
           WE ASVL+FL +F PLL   ++ +AEE E  L+ PN  L+++H+ LLK IPP+ +     
Sbjct: 30  WELASVLHFLDVFSPLLGNDLKVTAEEIEIGLVKPNAFLTNLHIQLLKGIPPVGKALHDS 89

Query: 62  DTWITVLCRKLRDWWHWVAEGDIPVVASHGAEIDVYKSLDPGVRVIILKALCDIRVEQED 121
           D W+T L +KL  WW WVAEG  P+V S G EI  YK LDP  R+++LKALC++R +Q D
Sbjct: 90  DKWVTALSKKLTTWWPWVAEGKNPLVPSKGEEISKYKELDPLDRLLLLKALCEVRADQHD 149

Query: 122 IRSYIDNSVKHGVQLSTFRKERVGGDSHGVSFWYE-DDPIIGHRLYREIRKTEVVQLKKG 180
           + SYI++++K G Q+S+FRKE  G D    S+WY+ +     HRLYRE     +  +   
Sbjct: 150 VVSYINDALKEGTQISSFRKEAFGIDGTRTSYWYDANTKAQSHRLYRET----ITSVSTP 205

Query: 181 KPRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRMEVSVGKKIKIDMLPEVE 236
             +G   LS   +QWET+ATN DEF +V+EKL SSK+R+E+ +G +++ D +P +E
Sbjct: 206 NRKGKGCLSLPNFQWETLATNLDEFSEVAEKLSSSKSRVEIYMGDRLQSDAIPVLE 261