Miyakogusa Predicted Gene

Lj6g3v0352750.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0352750.2 tr|Q9LMD3|Q9LMD3_ARATH F14D16.9 OS=Arabidopsis
thaliana GN=Clgn PE=4 SV=1,87.76,8e-18,FAMILY NOT NAMED,NULL; DDT,DDT
domain,CUFF.57728.2
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18950.1 | Symbols:  | DDT domain superfamily | chr1:6546539-...   401   e-112
AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   198   3e-51

>AT1G18950.1 | Symbols:  | DDT domain superfamily |
           chr1:6546539-6551549 FORWARD LENGTH=750
          Length = 750

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 184/239 (76%), Positives = 214/239 (89%), Gaps = 3/239 (1%)

Query: 1   MWEFASVLNFLHLFRPLLNISVEFSAEEFETALLTPNDTLSDVHMPLLKAIPPITRMALS 60
           MWE ASVLNFLH+FRPLL I+ EFSAEEFETALLTPNDTLSD+H+PLLKAIPP+TRMAL+
Sbjct: 136 MWELASVLNFLHVFRPLLKINAEFSAEEFETALLTPNDTLSDIHIPLLKAIPPVTRMALT 195

Query: 61  RDTWITVLCRKLRDWWHWVAEGDIPVVASHGAEIDVYKSLDPGVRVIILKALCDIRVEQE 120
           RDTW+TVLCRK+RD WHWVAEGD+P+VA  G EI+VYK+LDP +RV+ILKALCDIRVEQE
Sbjct: 196 RDTWVTVLCRKIRDCWHWVAEGDLPIVALQGREIEVYKNLDPAIRVVILKALCDIRVEQE 255

Query: 121 DIRSYIDNSVKHGVQLSTFRKERVGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQLKKG 180
           DIRSYIDNS+K GV LS FRK+RVGGDSHGV+FWYE+DP+IGHRLYREIRK EV+++K  
Sbjct: 256 DIRSYIDNSLKTGVHLSVFRKDRVGGDSHGVNFWYEEDPLIGHRLYREIRKAEVLKVKT- 314

Query: 181 KPRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRMEVSVGKKIKIDMLPEVEIVH 239
             +GS++L N TYQWETVATNFDEFQDVSEKL  S +R+EVS+GKK+  DMLPE+E  H
Sbjct: 315 --KGSKILPNITYQWETVATNFDEFQDVSEKLLQSSSRIEVSLGKKLVKDMLPEIEKEH 371


>AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178
           Blast hits to 178 proteins in 75 species: Archae - 0;
           Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60;
           Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink).
           | chr5:8903550-8906108 FORWARD LENGTH=405
          Length = 405

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 9/238 (3%)

Query: 2   WEFASVLNFLHLFRPLLNISVEFSAEEFETALLTPNDTLSDVHMPLLKAIPPITRMALSR 61
           WE ASVLNF ++F PL++  ++F+AEE E  L+  N T + +H+ LLK IPP+ +     
Sbjct: 52  WELASVLNFFNVFGPLVSEKLKFTAEEIEMGLIESNTTNAQLHIALLKGIPPVNKTLDDA 111

Query: 62  DTWITVLCRKLRDWWHWVAEGDIPVVASHGAEIDVYKSLDPGVRVIILKALCDIRVEQED 121
           + WITVLC+KL  WW W+A+G+I +  + G EI  Y+ LD   R+ ILKALC++RV+Q+D
Sbjct: 112 NAWITVLCKKLAPWWPWIAKGEIHITVNKGEEISEYQGLDSINRLKILKALCELRVQQDD 171

Query: 122 IRSYIDNSVKHGVQLSTFRKERVGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQLKKGK 181
            RSYI  + K G   S+ RK ++GGD    S+W++ + I G+RLYRE+           K
Sbjct: 172 ARSYIQENTKEGDWDSSLRKRKLGGDGKKTSYWFDGNDIQGYRLYREVNGI------SKK 225

Query: 182 PRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRMEVSVGKKIKIDMLPEVEIVH 239
             GS +   +   WET ATN DEFQ V+ +L SSK     + G+ I+ + +P VE  H
Sbjct: 226 NAGSDL---SCLSWETEATNLDEFQSVARELSSSKASSLAATGQMIETEAIPVVEKYH 280