Miyakogusa Predicted Gene

Lj6g3v0156170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0156170.1 tr|Q53D73|Q53D73_LOTJA Superoxide dismutase
OS=Lotus japonicus GN=sodB PE=2 SV=1,99.56,0,seg,NULL; Fe,Mn
superoxide dismutase (SOD), N-terminal domain,Manganese/iron
superoxide dismutase, N,CUFF.57556.1
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:2...   262   2e-70
AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...   198   3e-51
AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...   198   3e-51
AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...   198   3e-51
AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 ...   198   3e-51
AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...   172   2e-43
AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7...   169   2e-42
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxid...    66   2e-11
AT3G10920.2 | Symbols: MSD1 | manganese superoxide dismutase 1 |...    62   5e-10
AT3G56350.1 | Symbols:  | Iron/manganese superoxide dismutase fa...    55   3e-08

>AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 |
           chr5:20773357-20775635 REVERSE LENGTH=305
          Length = 305

 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 148/191 (77%)

Query: 38  FKFSKKQRRCVRKAGPTEISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLN 97
           +K + K+R   + A    I+A FELKPPPYP++ALEP MS+ET +YHWGKHH+ YV+NLN
Sbjct: 31  WKRNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLN 90

Query: 98  KQIEGTDLDGKSLEELIVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXX 157
           KQI GTDLD  SLEE+++++YNKG+MLP+FNNAAQAWNHEFFW                 
Sbjct: 91  KQILGTDLDALSLEEVVLLSYNKGNMLPAFNNAAQAWNHEFFWESIQPGGGGKPTGELLR 150

Query: 158 XIERDFGSFEKFVDEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKT 217
            IERDFGSFE+F++ FK+AAA+ FGSGW WLAYK NRLDV NA+NPL  +EDKKLV+VKT
Sbjct: 151 LIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKANRLDVANAVNPLPKEEDKKLVIVKT 210

Query: 218 PNAVNPLVWGY 228
           PNAVNPLVW Y
Sbjct: 211 PNAVNPLVWDY 221


>AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 119/179 (66%), Gaps = 17/179 (9%)

Query: 51  AGPTEISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEGTDLDGKSL 110
           A  + ++A + LKPPP+ ++ALEP MS++T  +HWGKHHRAYVDNL KQ+ GT+L+GK L
Sbjct: 2   AASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPL 61

Query: 111 EELIVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFV 170
           E +I   YN GD+LP+FNNAAQAWNHEFFW                  +ERDF S+EKF 
Sbjct: 62  EHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFY 121

Query: 171 DEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY 229
           +EF  AAATQFG+GWAWLAY                  ++KL VVKTPNAVNPLV G +
Sbjct: 122 EEFNAAAATQFGAGWAWLAYS-----------------NEKLKVVKTPNAVNPLVLGSF 163


>AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 119/179 (66%), Gaps = 17/179 (9%)

Query: 51  AGPTEISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEGTDLDGKSL 110
           A  + ++A + LKPPP+ ++ALEP MS++T  +HWGKHHRAYVDNL KQ+ GT+L+GK L
Sbjct: 2   AASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPL 61

Query: 111 EELIVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFV 170
           E +I   YN GD+LP+FNNAAQAWNHEFFW                  +ERDF S+EKF 
Sbjct: 62  EHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFY 121

Query: 171 DEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY 229
           +EF  AAATQFG+GWAWLAY                  ++KL VVKTPNAVNPLV G +
Sbjct: 122 EEFNAAAATQFGAGWAWLAYS-----------------NEKLKVVKTPNAVNPLVLGSF 163


>AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 119/179 (66%), Gaps = 17/179 (9%)

Query: 51  AGPTEISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEGTDLDGKSL 110
           A  + ++A + LKPPP+ ++ALEP MS++T  +HWGKHHRAYVDNL KQ+ GT+L+GK L
Sbjct: 2   AASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPL 61

Query: 111 EELIVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFV 170
           E +I   YN GD+LP+FNNAAQAWNHEFFW                  +ERDF S+EKF 
Sbjct: 62  EHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFY 121

Query: 171 DEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY 229
           +EF  AAATQFG+GWAWLAY                  ++KL VVKTPNAVNPLV G +
Sbjct: 122 EEFNAAAATQFGAGWAWLAYS-----------------NEKLKVVKTPNAVNPLVLGSF 163


>AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 119/179 (66%), Gaps = 17/179 (9%)

Query: 51  AGPTEISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEGTDLDGKSL 110
           A  + ++A + LKPPP+ ++ALEP MS++T  +HWGKHHRAYVDNL KQ+ GT+L+GK L
Sbjct: 2   AASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPL 61

Query: 111 EELIVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFV 170
           E +I   YN GD+LP+FNNAAQAWNHEFFW                  +ERDF S+EKF 
Sbjct: 62  EHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFY 121

Query: 171 DEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY 229
           +EF  AAATQFG+GWAWLAY                  ++KL VVKTPNAVNPLV G +
Sbjct: 122 EEFNAAAATQFGAGWAWLAYS-----------------NEKLKVVKTPNAVNPLVLGSF 163


>AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12885660 REVERSE LENGTH=186
          Length = 186

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 101/154 (65%), Gaps = 17/154 (11%)

Query: 76  MSQETFNYHWGKHHRAYVDNLNKQIEGTDLDGKSLEELIVIAYNKGDMLPSFNNAAQAWN 135
           MS++T  +HWGKHHRAYVDNL KQ+ GT+L+GK LE +I   YN GD+LP+FNNAAQAWN
Sbjct: 1   MSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWN 60

Query: 136 HEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFVDEFKTAAATQFGSGWAWLAYKENRL 195
           HEFFW                  +ERDF S+EKF +EF  AAATQFG+GWAWLAY     
Sbjct: 61  HEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS---- 116

Query: 196 DVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY 229
                        ++KL VVKTPNAVNPLV G +
Sbjct: 117 -------------NEKLKVVKTPNAVNPLVLGSF 137


>AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 |
           chr5:7850624-7852241 FORWARD LENGTH=263
          Length = 263

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 105/173 (60%), Gaps = 16/173 (9%)

Query: 55  EISAKFELKPPPYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEGTD-LDGKSLEEL 113
           ++ A + LK PPYP++ALEP MS+ T   HWGKHHR YVDNLNKQ+   D L G ++EEL
Sbjct: 45  KVEAYYGLKTPPYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEEL 104

Query: 114 IVIAYNKGDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFEKFVDEF 173
           I   YN G+ LP FNNAAQ +NH+FFW                  I++DFGSF  F ++F
Sbjct: 105 IKATYNNGNPLPEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKF 164

Query: 174 KTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVW 226
             AA TQFGSGW WL  K                E+++L VVKT NA+NPLVW
Sbjct: 165 TNAALTQFGSGWVWLVLKR---------------EERRLEVVKTSNAINPLVW 202


>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide
           dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231
          Length = 231

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 77/204 (37%), Gaps = 52/204 (25%)

Query: 46  RCV--RK--AGPTEISAK---------FELKPPPYPMNALEPIMSQETFNYHWGKHHRAY 92
           RCV  RK  AG  E S++         F L   PY   ALEP +S E    H  KHH+AY
Sbjct: 4   RCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAY 63

Query: 93  VDNLNKQIEGTDLDGKSLEELIVIAYNKGDM-----LPS---FNNAAQAWNHEFFWXXXX 144
           V N N  +E  D            A NKGD      L S   FN      NH  FW    
Sbjct: 64  VTNYNNALEQLDQ-----------AVNKGDASTVVKLQSAIKFNGGGHV-NHSIFWKNLA 111

Query: 145 XXXXXXX---XXXXXXXIERDFGSFEKFVDEFKTAAATQFGSGWAWLAYKENRLDVGNAI 201
                            I+  FGS E  V +     A   GSGW WL      LD     
Sbjct: 112 PSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLG-----LD----- 161

Query: 202 NPLASDEDKKLVVVKTPNAVNPLV 225
                 E KKLVV  T N  +PLV
Sbjct: 162 -----KELKKLVVDTTANQ-DPLV 179


>AT3G10920.2 | Symbols: MSD1 | manganese superoxide dismutase 1 |
           chr3:3418015-3419581 FORWARD LENGTH=230
          Length = 230

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 77/204 (37%), Gaps = 53/204 (25%)

Query: 46  RCV--RK--AGPTEISAK---------FELKPPPYPMNALEPIMSQETFNYHWGKHHRAY 92
           RCV  RK  AG  E S++         F L   PY   ALEP +S E    H  KHH+AY
Sbjct: 4   RCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAY 63

Query: 93  VDNLNKQIEGTDLDGKSLEELIVIAYNKGDM-----LPS---FNNAAQAWNHEFFWXXXX 144
           V N N  +E  D            A NKGD      L S   FN      NH  FW    
Sbjct: 64  VTNYNNALEQLDQ-----------AVNKGDASTVVKLQSAIKFNGGGHV-NHSIFWKNLA 111

Query: 145 XXXXXXX---XXXXXXXIERDFGSFEKFVDEFKTAAATQFGSGWAWLAYKENRLDVGNAI 201
                            I+  FGS E  V +     A   GSGW WL      LD     
Sbjct: 112 PSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGW-WLG-----LD----- 160

Query: 202 NPLASDEDKKLVVVKTPNAVNPLV 225
                 E KKLVV  T N  +PLV
Sbjct: 161 -----KELKKLVVDTTANQ-DPLV 178


>AT3G56350.1 | Symbols:  | Iron/manganese superoxide dismutase
           family protein | chr3:20894155-20895625 REVERSE
           LENGTH=241
          Length = 241

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 60/168 (35%), Gaps = 33/168 (19%)

Query: 66  PYPMNALEPIMSQETFNYHWGKHHRAYVDNLNKQIEG-----TDLDGKSLEELIVIAYNK 120
           PY  +ALEP +S+E    H  KHH+ YV   NK +        D D  S+ +L       
Sbjct: 42  PYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSVVKL------- 94

Query: 121 GDMLPSFNNAAQAWNHEFFWXXXXXXXXXXXX---XXXXXXIERDFGSFEKFVDEFKTAA 177
              L  FN      NH  FW                     I+  FGS E  + +     
Sbjct: 95  -QSLIKFNGGGHV-NHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEG 152

Query: 178 ATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLV 225
           A   GSGW W                   D + K +VV+T    +PLV
Sbjct: 153 AAVQGSGWVWFGL----------------DRELKRLVVETTANQDPLV 184