Miyakogusa Predicted Gene

Lj5g3v2298230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2298230.1 tr|G5AWN5|G5AWN5_HETGA Transmembrane protein 120B
OS=Heterocephalus glaber GN=GW7_03111 PE=4 SV=1,25.63,1e-18,seg,NULL;
coiled-coil,NULL; TMPIT,TMPIT-like; TRANSMEMBRANE PROTEIN INDUCED BY
TUMOR NECROSIS FACTOR,CUFF.57328.1
         (359 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116510.1 | TMPIT-like protein | HC | chr1:52707959-527132...   605   e-173

>Medtr1g116510.1 | TMPIT-like protein | HC | chr1:52707959-52713201
           | 20130731
          Length = 361

 Score =  605 bits (1559), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/345 (86%), Positives = 311/345 (90%)

Query: 15  SVSSVLEEAKELQESVSNHISKTLSDEQPLRQRALALDSKIHXXXXXXXXXXHNKLINPS 74
           SV SVLEEAKE+Q+SVS HISKTLSDEQPLRQRAL LDSKI            NKLI PS
Sbjct: 17  SVVSVLEEAKEIQDSVSVHISKTLSDEQPLRQRALVLDSKIISLRSSLDSLLSNKLIQPS 76

Query: 75  VADKLDEDLQRARCIVVDGDASSLLPGHAQGSFLRMFLGPINVRASRKDVQLKVKEEYNS 134
           +ADKLDEDLQRARCI+VDGDAS LLPGHAQG FLRMFLGPINVRASRKDVQLKVKEEYNS
Sbjct: 77  LADKLDEDLQRARCIIVDGDASYLLPGHAQGKFLRMFLGPINVRASRKDVQLKVKEEYNS 136

Query: 135 YRDRTAXXXXXXXXXXXXXRSWLWDGCLPAFPVQIYQAWLLFLYTGLALRENILRVNGSD 194
           YRDRTA             RSW+W+GCLPAFPVQIYQAWLLFLYTGLALRENILRVNGSD
Sbjct: 137 YRDRTALLFLLFPAALLILRSWVWEGCLPAFPVQIYQAWLLFLYTGLALRENILRVNGSD 196

Query: 195 IRPWWIYHHYCAMLMALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQ 254
           IRPWWIYHHYCAM+MALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQ
Sbjct: 197 IRPWWIYHHYCAMIMALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQ 256

Query: 255 RLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPVLFILQGFEAYIGLLLLRTAFVGVISE 314
           RLYTRIALGKAKRMDVVWGETAGVDGQLWLLCP+LFILQGFEAY+GLLLLRTAFVGV SE
Sbjct: 257 RLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLRTAFVGVASE 316

Query: 315 WQVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMRKSKSKQRLN 359
           WQVIFCG+LLV+MAIGNF NTVQTLL KSRFKAKM+++KSKQRLN
Sbjct: 317 WQVIFCGLLLVVMAIGNFQNTVQTLLVKSRFKAKMKRTKSKQRLN 361