Miyakogusa Predicted Gene

Lj5g3v2013860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013860.1 CUFF.56517.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 | ...    63   9e-11

>AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 |
           chr3:22671306-22672551 FORWARD LENGTH=299
          Length = 299

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 70/155 (45%), Gaps = 29/155 (18%)

Query: 1   MVQWESARVEAEARLSMESSLLNP---CSAGKTCPDHILQLWHSEVGQSFRMLKGKEGLV 57
           M QWESARVEAEARLS ES L +P       KT  DH L++W+SE+G++FR L       
Sbjct: 147 MAQWESARVEAEARLSRESMLFSPSFYSGVVKTECDHFLRIWNSEIGEAFRNLAP----- 201

Query: 58  CEILVXXXXXXXXXXXXXXXXXXXXLQGKSTGTSSHIAKLEDVNMIQEQASSYKPKLEDD 117
              L                     L+   + T+S   K   V +     S Y   LED 
Sbjct: 202 ---LDESTITSQSPCSRATSTSSALLK---SSTNSWGGKEVTVAIHGSDYSPYSNDLED- 254

Query: 118 KAVLESGNYEFLDTSDSALKHLLDIP--DGDIGFL 150
                       D++DSAL+ LLD P  D D+ FL
Sbjct: 255 ------------DSTDSALQLLLDFPISDDDMSFL 277