Miyakogusa Predicted Gene

Lj5g3v1533340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1533340.1 Non Chatacterized Hit- tr|D7UAB3|D7UAB3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,32.95,0.000000002,seg,NULL; coiled-coil,NULL,CUFF.55504.1
         (917 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05900.1 | Symbols:  | neurofilament protein-related | chr3:1...    59   1e-08

>AT3G05900.1 | Symbols:  | neurofilament protein-related |
           chr3:1761408-1763854 REVERSE LENGTH=673
          Length = 673

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 2/43 (4%)

Query: 867 KETPAKPAQKQSNNIISKVKQSLAKAKKAITGKSPSSKNLSPE 909
           KE PAK  QK SN+IISKVKQSL KAKKAI G+SPSSK ++ E
Sbjct: 625 KEAPAK--QKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTE 665