Miyakogusa Predicted Gene
- Lj5g3v1412680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1412680.1 Non Chatacterized Hit- tr|D8RCQ7|D8RCQ7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,56.58,2e-17,RING/U-box,NULL; RING FINGER PROTEIN,NULL;
zf-C3HC4,Zinc finger, C3HC4 RING-type; ZF_RING_2,Zinc fin,CUFF.55194.1
(398 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 | ch... 325 3e-89
AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch... 298 4e-81
AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch... 142 5e-34
AT3G23060.1 | Symbols: | RING/U-box superfamily protein | chr3:... 102 5e-22
AT5G13250.1 | Symbols: | RING finger protein | chr5:4234486-424... 75 9e-14
AT1G28080.1 | Symbols: | RING finger protein | chr1:9789826-979... 62 5e-10
>AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 |
chr2:13026444-13030363 FORWARD LENGTH=420
Length = 420
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/413 (46%), Positives = 251/413 (60%), Gaps = 48/413 (11%)
Query: 1 MVATVKVKSDKLRPCMTCPLCRKLFKDATTISLCLHTFCRKCIYEKLSDEESDCCPVCNI 60
MVA KVK + + CMTCPLC KL +DATTIS CLHTFCRKCIYEK++++E + CPVC+I
Sbjct: 5 MVA--KVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDI 62
Query: 61 DLGCVPVEKLRADHNLQDIRTKLFPLKRRKTKAPEVLSPIPLPAKRKERSLSSLAVIAPK 120
DLG P+EKLR DH LQD+R KLFPLKR+K +APEV+S I LPAKRKERS+SSL V P+
Sbjct: 63 DLGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPR 122
Query: 121 VSMQTGFTGKRTKTSNRKAASLRGCSFILEDPVKKEETNNEDNKDSSKAGQ----FKKHK 176
VS Q G TGKRTK + RK +RG + VKKEE +D+ +S+ + + F ++K
Sbjct: 123 VSAQAGTTGKRTKAATRK--DVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNK 180
Query: 177 -------PNEDMENSV-----ELAEGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELE 224
PN+ + N E + K+ LW PLN LV+ AN TK K+ E
Sbjct: 181 RQSSYANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTKDPKS----------E 230
Query: 225 CPTTSHGGLDQPETTTKTGLPAFAQNELNIPKCKIKDTGHKKLFGVDKDAKCVPSGPAKR 284
SH + +T TK + KCK+++ + D + KR
Sbjct: 231 LGNASHNDVQGSKTKTKD----------HKRKCKLEEE-----ISNNGDPTTSETATLKR 275
Query: 285 KRLRPAGQKRAAASDMSASAPGMLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSC 344
R + PG S K R+N +WFSLVAS +Q+G+ASLPQI +
Sbjct: 276 TRRTRRKRSSTFGDSRIPLLPGAASL---KQERRNGHVWFSLVASSNQEGEASLPQIPAN 332
Query: 345 YLRIRDGTVPVSFIQKYLVKKLNLASETEVEIMCQGQPVLPSLQLHNVVDLWF 397
YLRIRDG +PVSFIQKYL++KL+L SE EVEI C G+PV+P+LQLH++VDLW
Sbjct: 333 YLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWL 385
>AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
chr1:2079222-2081707 REVERSE LENGTH=421
Length = 421
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 180/411 (43%), Positives = 248/411 (60%), Gaps = 43/411 (10%)
Query: 5 VKVKSDKLRPCMTCPLCRKLFKDATTISLCLHTFCRKCIYEKLSDEESDCCPVCNIDLGC 64
+KVK + +R C++C +C + +DATTIS CLHTFCRKCIYEK++++E + CPVCNIDLG
Sbjct: 3 IKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGS 62
Query: 65 VPVEKLRADHNLQDIRTKLFPLKRRKTKAPEVLSPIPLPAKRKERSLSSLAVIAPKVSMQ 124
P+EKLR DHNLQD+R K+F LKRRK KAP ++S LP KRKERS+SSL V P VS Q
Sbjct: 63 TPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIVS---LPGKRKERSISSLVVSTPMVSAQ 119
Query: 125 TGFTGKRTKTSNRKAASLRGCSFILEDPVKKEETNNEDNKDSSKA----GQFKKHK---- 176
G T +RTK RK LR S + E VKKEE++ ++ +S+ + +F ++K
Sbjct: 120 AGTTRRRTKAPTRK--ELRNGS-LAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQSK 176
Query: 177 -------PNEDMENSVELAEGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELECPTTS 229
N++ ++ E + K+D W PLN LVE AN TK K+++ S
Sbjct: 177 KSCKESISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSA-------------S 222
Query: 230 HGGLDQPETTTKTGLPAFAQNELNIPKCKIKDTGHKKLFGVDKDAKCVP--SGPAKRKRL 287
G + +K+ ++N+ K K K+ K DK P S KR+
Sbjct: 223 QG------SGSKSEHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRM 276
Query: 288 RPAGQKRAAASDMSASAPGMLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSCYLR 347
R +KR+A + + + K R+N P+WFSLVAS DQ+G SLPQI + +LR
Sbjct: 277 RTTQRKRSATTLGDSRNLPQPDESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLR 336
Query: 348 IRDGTVPVSFIQKYLVKKLNLASETEVEIMCQGQPVLPSLQLHNVVDLWFR 398
IRDG VSFIQKYL++KL+L SE E+EI C G+ V+P+L L+N+VDLW +
Sbjct: 337 IRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGEAVIPTLTLYNLVDLWLQ 387
>AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
chr1:2079222-2080658 REVERSE LENGTH=307
Length = 307
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 156/295 (52%), Gaps = 40/295 (13%)
Query: 121 VSMQTGFTGKRTKTSNRKAASLRGCSFILEDPVKKEETNNEDNKDSSKA----GQFKKHK 176
VS Q G T +RTK RK LR S + E VKKEE++ ++ +S+ + +F ++K
Sbjct: 2 VSAQAGTTRRRTKAPTRK--ELRNGS-LAERTVKKEESSGDELLESTSSPDTLNKFTQNK 58
Query: 177 -----------PNEDMENSVELAEGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELEC 225
N++ ++ E + K+D W PLN LVE AN TK K+
Sbjct: 59 RQSKKSCKESISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKS------------ 105
Query: 226 PTTSHGGLDQPETTTKTGLPAFAQNELNIPKCKIKDTGHKKLFGVDKDAKCVP--SGPAK 283
+ S G + +K+ ++N+ K K K+ K DK P S
Sbjct: 106 -SASQG------SGSKSEHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVT 158
Query: 284 RKRLRPAGQKRAAASDMSASAPGMLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISS 343
KR+R +KR+A + + + K R+N P+WFSLVAS DQ+G SLPQI +
Sbjct: 159 PKRMRTTQRKRSATTLGDSRNLPQPDESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPA 218
Query: 344 CYLRIRDGTVPVSFIQKYLVKKLNLASETEVEIMCQGQPVLPSLQLHNVVDLWFR 398
+LRIRDG VSFIQKYL++KL+L SE E+EI C G+ V+P+L L+N+VDLW +
Sbjct: 219 NFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGEAVIPTLTLYNLVDLWLQ 273
>AT3G23060.1 | Symbols: | RING/U-box superfamily protein |
chr3:8200868-8203116 FORWARD LENGTH=480
Length = 480
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 58/79 (73%)
Query: 6 KVKSDKLRPCMTCPLCRKLFKDATTISLCLHTFCRKCIYEKLSDEESDCCPVCNIDLGCV 65
KV S +++PC+ CP+C FKDATTIS CLHTFCR CI K +E + CPVCN++LG
Sbjct: 4 KVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVF 63
Query: 66 PVEKLRADHNLQDIRTKLF 84
P+EKLR+D QD++ K++
Sbjct: 64 PLEKLRSDCTWQDLKLKIY 82
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 57/82 (69%)
Query: 317 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASETEVEI 376
R N+P+WFSL S+ Q + LP I++C +R++D + VS+++KYL+ KL L SE +VEI
Sbjct: 360 RNNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEI 419
Query: 377 MCQGQPVLPSLQLHNVVDLWFR 398
+ +PV SL LHN+VD W +
Sbjct: 420 WLRDEPVCSSLTLHNLVDWWVQ 441
>AT5G13250.1 | Symbols: | RING finger protein |
chr5:4234486-4241615 FORWARD LENGTH=387
Length = 387
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 317 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASET-EVE 375
R +S IWF L AS++Q + LPQI YLRI+DG + V + KYLV KL L E+ +VE
Sbjct: 271 RPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLEHESQQVE 330
Query: 376 IMCQGQPVLPSLQLHNVVDLWFR 398
I C+GQ + P L L +V D +R
Sbjct: 331 IRCRGQELEPVLTLQHVRDAIWR 353
>AT1G28080.1 | Symbols: | RING finger protein |
chr1:9789826-9790918 FORWARD LENGTH=291
Length = 291
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 317 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASETEVEI 376
R +S +WF L AS+ Q+ + LPQ++ YLRI+DG + V + KYL+KKL L SE+EV I
Sbjct: 232 RPHSGLWFLLQASQFQEREPFLPQVNKSYLRIKDGRITVRLLIKYLMKKLELDSESEVNI 291