Miyakogusa Predicted Gene

Lj5g3v1260890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1260890.1 tr|D7KID0|D7KID0_ARALL Ubiquitin
carboxyl-terminal hydrolase OS=Arabidopsis lyrata subsp. lyrata
GN=,40.82,6e-19, ,CUFF.55099.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 | ch...   110   3e-25
AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...   105   2e-23
AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...   105   2e-23
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 | ...    82   2e-16

>AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 |
           chr4:6523657-6528058 REVERSE LENGTH=923
          Length = 923

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 10/157 (6%)

Query: 13  LDRMKGGERKLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGF 72
           LD ++G + KLFGTP VTY+   P  G DI+  +   L+PL K ++ +K H+    +NG 
Sbjct: 594 LDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPLHKVHAPSKIHNG--SDNGH 651

Query: 73  ISAGSDEQSNISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFIK 132
           ++  + +Q+  S   S P        E +  S  E SF++ LT+ER L+ +P    S I 
Sbjct: 652 LADATVDQA--SGILSSP------DTEIDNASDRELSFRIFLTDERGLNIKPLQSESSIS 703

Query: 133 PSQHIRVFLDWTDKEHELYDASYLRDLPEVHKTGFTV 169
           P    RV ++W + EHE YD+SYL DLPEVHKT F+ 
Sbjct: 704 PGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSA 740


>AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 12/158 (7%)

Query: 13  LDRMKGGERKLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGF 72
           L+ ++G + KLFGTP VTY+   P  GADI+  + + L+PL K ++ +K H+    ENG 
Sbjct: 593 LESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPLHKVHAPSKIHNG--SENGH 650

Query: 73  I-SAGSDEQSNISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFI 131
           +  A  DE S I ++            E +  S  E SF++ LT+ER L+ +P    S I
Sbjct: 651 LPDATVDEASEILSSPD---------TEIDDASDRELSFRIFLTDERGLNFKPLQSESSI 701

Query: 132 KPSQHIRVFLDWTDKEHELYDASYLRDLPEVHKTGFTV 169
                 RV ++W + EHE YD+SYL DLPEVHKT F+ 
Sbjct: 702 SLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSA 739


>AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 12/158 (7%)

Query: 13  LDRMKGGERKLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGF 72
           L+ ++G + KLFGTP VTY+   P  GADI+  + + L+PL K ++ +K H+    ENG 
Sbjct: 593 LESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPLHKVHAPSKIHNG--SENGH 650

Query: 73  I-SAGSDEQSNISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFI 131
           +  A  DE S I ++            E +  S  E SF++ LT+ER L+ +P    S I
Sbjct: 651 LPDATVDEASEILSSPD---------TEIDDASDRELSFRIFLTDERGLNFKPLQSESSI 701

Query: 132 KPSQHIRVFLDWTDKEHELYDASYLRDLPEVHKTGFTV 169
                 RV ++W + EHE YD+SYL DLPEVHKT F+ 
Sbjct: 702 SLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSA 739


>AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |
           chr1:11902629-11906900 FORWARD LENGTH=892
          Length = 892

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 16/143 (11%)

Query: 22  KLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGFISAGSDEQS 81
           K FGTPLVTY+ + P  G DI  S+  LL+PLR+ + S   +  +E  NG +    DE S
Sbjct: 595 KCFGTPLVTYINKEPLSGTDIATSISGLLSPLRRVHMSCVVNSGNE--NGHVP---DESS 649

Query: 82  NISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFIKPSQHIRVFL 141
                       +I SR+ E   +       +L +    + +P +  S + P    +V +
Sbjct: 650 R-----------SILSRDTETEDNDRELSLSLLRDYYSFNLQPLESDSVVNPGSVTKVLV 698

Query: 142 DWTDKEHELYDASYLRDLPEVHK 164
            W +KEHE YD+SYL DLP+VHK
Sbjct: 699 KWNEKEHEKYDSSYLNDLPKVHK 721