Miyakogusa Predicted Gene

Lj5g3v1260890.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1260890.1 tr|D7KID0|D7KID0_ARALL Ubiquitin
carboxyl-terminal hydrolase OS=Arabidopsis lyrata subsp. lyrata
GN=,40.82,6e-19, ,CUFF.55099.1
         (508 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV776416 weakly similar to UniRef100_A7QJ40 Cluster: Ub...   537   e-152

>gnl|LJGI|AV776416 weakly similar to UniRef100_A7QJ40 Cluster: Ubiquitin
           carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
           Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
           (Grape), partial (7%)
          Length = 429

 Score =  537 bits (271), Expect = e-152
 Identities = 292/299 (97%)
 Strand = Plus / Plus

                                                                       
Query: 45  aatgaaaggtggagagaggaagctctttgggacccccttggttacttatttggtagaaaa 104
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 131 aatgaaaggtggagagaggaagctcttcgggacccccttggttacttattaggtagaaaa 190

                                                                       
Query: 105 ccctcaatatggagccgacattgaggaatctgtacataaactgttggcacctttaagaaa 164
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 ccctcaatatggagccgagattgaggaatctgtacatagactgttggcacctttaagaaa 250

                                                                       
Query: 165 agcatactcttcaactaagtctcatgatgatgatgaaaaggaaaatggtttcatctcagc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agcatactcttcaactaagtctcatgatgatgatgaaaaggaaaatggtttcatctcagc 310

                                                                       
Query: 225 tggcagtgatgagcaatcaaacatctcaaatactcaaagtgaacctaggaatcctacaat 284
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tggcagtgatgagcaatcatacatctcaaatactcaaagtgaacctaggaatcctacaat 370

                                                                      
Query: 285 tggcagcagagaacaagagggtacatcctctggggagtcatctttccaacttgttttaa 343
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tggcagcagagaacaaggaggtacatcctctggggagtcatctttccaacttgttttaa 429