Miyakogusa Predicted Gene

Lj5g3v1097070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1097070.1 Non Chatacterized Hit- tr|I1LYM0|I1LYM0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.24,0,DUF1681,Adaptin ear-binding coat-associated protein 1
NECAP-1; SUBFAMILY NOT NAMED,NULL; ATP-BINDING,gene.g61156.t1.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein ...   285   2e-77
AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated pr...   127   6e-30

>AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 |
           chr1:991252-992852 FORWARD LENGTH=272
          Length = 272

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/257 (66%), Positives = 190/257 (73%), Gaps = 25/257 (9%)

Query: 9   SFEHTLLVVREVSVYKIPPRTTSG---------SDKIWTGRIRVVSRRDRCEIRLEDPAS 59
           +FEHTLLVVREVSVYKIPPRTTSG         SDKIW+GR+RVVS +DRCEIRLED  S
Sbjct: 11  TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70

Query: 60  GDLFAACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDFNVALS 119
           GDLFAACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGF ERNEAFDFNVALS
Sbjct: 71  GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALS 130

Query: 120 DHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINVKHK-TPGGTGMLSAA 178
           DHEKYVRRE +KE+G   +  D+ IDIHPAVNHRLKEGETIRINVK K T  GTGMLSAA
Sbjct: 131 DHEKYVRREKEKETGET-SESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA 189

Query: 179 GLTGGHAATPKPKVLSLAXXXXXXXXXXXXXXXXXNDPVAARIVSTTHGSGPKGTHEGVR 238
            L+G    T KPK L+LA                 NDPVA+RI S        G  E  R
Sbjct: 190 -LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIAS-------DGCKESRR 237

Query: 239 HSTDALSDLSQLQKNLP 255
           +  + LSDLSQL+KNLP
Sbjct: 238 N--EPLSDLSQLKKNLP 252


>AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated
           protein 1 NECAP-1 | chr3:21668746-21670999 REVERSE
           LENGTH=302
          Length = 302

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 104/179 (58%), Gaps = 25/179 (13%)

Query: 5   EEDESFEHTLLVVREVSVYKIPPRTTSGSDKI---------WTGRIRVVSRRDRCEIRLE 55
           EE E+ E  L  V E  VY IPPR T+ S +          W G ++VVS+ + C I+L 
Sbjct: 27  EEREAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLV 86

Query: 56  DPASGDLFAACFVYPGQREGS---VEPVLDSSRYFVLKIE---DGQGKHAFIGLGFNERN 109
           D  +G+L+A  F+    REG    VE V+DSSRYFVL++E   DG+ +HAFIGLGF ER 
Sbjct: 87  DKTTGELYAQAFL----REGELHPVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERT 142

Query: 110 EAFDFNVALSDHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINVKHKT 168
           EA+DF  AL DH KY+ ++   E         S +D      + LKEGETI + +K+++
Sbjct: 143 EAYDFQAALHDHMKYLNKKKTAEEMEQHYQNTSSVD------YSLKEGETIVLQLKNRS 195