Miyakogusa Predicted Gene

Lj5g3v0975910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975910.1 tr|G7IED1|G7IED1_MEDTR MRNA-binding protein
OS=Medicago truncatula GN=MTR_1g072260 PE=4 SV=1,89.55,0,seg,NULL; no
description,NAD(P)-binding domain; UDP-GLUCOSE 4-EPIMERASE
(GALE-2),NULL; NAD DEPENDENT,CUFF.54451.1
         (404 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g072260.1 | stem-loop-binding protein of 41 kDa protein A ...   656   0.0  
Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B ...   193   3e-49

>Medtr1g072260.1 | stem-loop-binding protein of 41 kDa protein A |
           HC | chr1:32066134-32063750 | 20130731
          Length = 401

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/355 (89%), Positives = 330/355 (92%), Gaps = 1/355 (0%)

Query: 50  FLAHPSSVSGRFGKHXXXXXXXXXXXEKKKVLIVNTNSGGHAVIGFYFAKELLGASHEVT 109
           FL+HPS  S R   H           EKKKVLI+NTNSGGHAVIGFYFAKELLGA H VT
Sbjct: 48  FLSHPSLTSKRLANHATLSISASAA-EKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVT 106

Query: 110 ILTVGEESSDKMKKPPFNRFSEIVSAGGRTVWGNPAEVGSVLGGEAFDVVLDNNGKDLES 169
           ILTVG+ESSDKMKKPPFNRFSEIVSAGG TVWGNPA+VGSV+GGEAFDVVLDNNGKDLES
Sbjct: 107 ILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLES 166

Query: 170 VRPVIDWAKSSGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFESWA 229
           VRPVIDWAKS+GAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETF+SWA
Sbjct: 167 VRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWA 226

Query: 230 VFRPQYMIGSGNNKDNEEWFFDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPD 289
           VFRPQYM GSGNNKD EEWFFDRIVRDRPV IP SGLQLTNI+HV+DLSSMLTLAVENPD
Sbjct: 227 VFRPQYMTGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPD 286

Query: 290 AANHTIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAE 349
           AANH+IFNCVSDRAVTL+G+AKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAE
Sbjct: 287 AANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAE 346

Query: 350 PRAAKTKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV 404
           PRAAKTKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPV V
Sbjct: 347 PRAAKTKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVSV 401


>Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B |
           HC | chr7:45955304-45952399 | 20130731
          Length = 378

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 174/328 (53%), Gaps = 20/328 (6%)

Query: 78  KKVLIVNTNSGGHAVIGFYFAKELLGASHEVTILTVGEES-SDKMKKPPFNRFSEIVSA- 135
           KK+LI+    GG   IG + +++L+   H+VT+ T G+   + ++       F++  S  
Sbjct: 54  KKILIM----GGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKI 109

Query: 136 ----GGRTVWGNPAEVGSVLGGEAFDVVLDNNGKDLESVRPVIDWAKSSGAKQFLFISSA 191
               G R  +     V S L  E FDVV D NG++ E V P++D   +   +QF++ SSA
Sbjct: 110 LHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILDALPN--LEQFIYCSSA 164

Query: 192 GIYKTTDEPPHVEGDAVKADAGHVG---VEKYIEETFESWAVFRPQYMIGSGNNKDNEEW 248
           G+Y  +D  PH E DAV   + H G    E  ++    +W   RP Y+ G  N    EEW
Sbjct: 165 GVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEW 224

Query: 249 FFDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVSDRAVTLDG 308
           FF R+   RP+PIP SG+Q+T + HV+DL++   L V   + A+  IFN   D+ VT DG
Sbjct: 225 FFHRLKAGRPIPIPGSGIQITQLGHVKDLATAF-LKVLGNEKASKQIFNISGDKYVTFDG 283

Query: 309 MAKLCAQAAGRPV-NIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWSSTTNLPE 367
           +A+ CA+A G P   I+HY+PK      KK+FPFR+ HF+A    AK+ LG      L E
Sbjct: 284 LARACAKAGGFPEPEIIHYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVE 343

Query: 368 DLKERFEEYIKIGRDKKPIKFELDDKIL 395
            L + +      G  +K   F  DD IL
Sbjct: 344 GLTDSYNLDFGRGTFRKEADFSTDDIIL 371