Miyakogusa Predicted Gene

Lj5g3v0975910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975910.1 tr|G7IED1|G7IED1_MEDTR MRNA-binding protein
OS=Medicago truncatula GN=MTR_1g072260 PE=4 SV=1,89.55,0,seg,NULL; no
description,NAD(P)-binding domain; UDP-GLUCOSE 4-EPIMERASE
(GALE-2),NULL; NAD DEPENDENT,CUFF.54451.1
         (404 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding pr...   577   e-165
AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bin...   196   4e-50

>AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding
           protein of  41 kDa | chr3:23327006-23328620 REVERSE
           LENGTH=406
          Length = 406

 Score =  577 bits (1488), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/327 (84%), Positives = 297/327 (90%)

Query: 76  EKKKVLIVNTNSGGHAVIGFYFAKELLGASHEVTILTVGEESSDKMKKPPFNRFSEIVSA 135
           EKK VLIVNTNSGGHAVIGFYFAKELL A H VTILTVG+ESS+KMKKPPFNRFSEIVS 
Sbjct: 78  EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSG 137

Query: 136 GGRTVWGNPAEVGSVLGGEAFDVVLDNNGKDLESVRPVIDWAKSSGAKQFLFISSAGIYK 195
           GG+TVWGNPA V +V+GGE FDVVLDNNGKDL++VRPV+DWAKSSG KQFLFISSAGIYK
Sbjct: 138 GGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYK 197

Query: 196 TTDEPPHVEGDAVKADAGHVGVEKYIEETFESWAVFRPQYMIGSGNNKDNEEWFFDRIVR 255
           +T++PPHVEGDAVKADAGHV VEKY+ ETF +WA FRPQYMIGSGNNKD EEWFFDRIVR
Sbjct: 198 STEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVR 257

Query: 256 DRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVSDRAVTLDGMAKLCAQ 315
           DR VPIP SGLQLTNI+HVRDLSSMLT AV NP+AA+  IFNCVSDRAVTLDGMAKLCA 
Sbjct: 258 DRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAA 317

Query: 316 AAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWSSTTNLPEDLKERFEE 375
           AAG+ V IVHYDPKAIG+DAKKAF FRN+HFYAEPRAAK  LGW S TNLPEDLKERFEE
Sbjct: 318 AAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEE 377

Query: 376 YIKIGRDKKPIKFELDDKILEALKVPV 402
           Y+KIGRDKK IKFELDDKILEALK PV
Sbjct: 378 YVKIGRDKKEIKFELDDKILEALKTPV 404


>AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA
           binding | chr1:3015473-3018035 FORWARD LENGTH=378
          Length = 378

 Score =  196 bits (497), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 173/329 (52%), Gaps = 20/329 (6%)

Query: 77  KKKVLIVNTNSGGHAVIGFYFAKELLGASHEVTILTVGEESSDKM----KKPPFNRFSEI 132
           +KK+LI+    GG   IG + ++ L+   H+VT+ T G+    K         F  FS  
Sbjct: 53  EKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSK 108

Query: 133 VS--AGGRTVWGNPAEVGSVLGGEAFDVVLDNNGKDLESVRPVIDWAKSSGAKQFLFISS 190
           +    G R  +     V S L  E FDVV D NG++ E V P+++       +Q+++ SS
Sbjct: 109 ILHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCSS 163

Query: 191 AGIYKTTDEPPHVEGDAVKADAGHVG---VEKYIEETFESWAVFRPQYMIGSGNNKDNEE 247
           AG+Y  +D  PH E DAV   + H G    E  ++    +W   RP Y+ G  N    EE
Sbjct: 164 AGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEE 223

Query: 248 WFFDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVSDRAVTLD 307
           WFF R+   RP+P+PNSG+Q++ + HV+DL++   L V   + A+  IFN   ++ VT D
Sbjct: 224 WFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTFD 282

Query: 308 GMAKLCAQAAGRPV-NIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWSSTTNLP 366
           G+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    AK  LGW    +L 
Sbjct: 283 GLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV 342

Query: 367 EDLKERFEEYIKIGRDKKPIKFELDDKIL 395
           E L + +      G  +K   F  DD IL
Sbjct: 343 EGLTDSYNLDFGRGTFRKEADFTTDDMIL 371