Miyakogusa Predicted Gene

Lj5g3v0805270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0805270.1 Non Chatacterized Hit- tr|D7G2J7|D7G2J7_ECTSI
Putative uncharacterized protein OS=Ectocarpus
silicul,48.91,8e-18,seg,NULL; Fe-S cluster assembly (FSCA)
domain-like,NULL,NODE_65482_length_418_cov_69.444977.path2.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   144   2e-35

>AT2G33180.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           stroma; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 57 Blast hits to 57
           proteins in 22 species: Archae - 0; Bacteria - 8;
           Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
           Eukaryotes - 14 (source: NCBI BLink). |
           chr2:14066479-14067314 FORWARD LENGTH=166
          Length = 166

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 77/90 (85%)

Query: 32  DLTESNVKQVLADARGEFGQIFDTSAGMTGIVELAELDGPFVKISLKGRFWHERSMVLAR 91
           DLTE N+  VL++AR E  Q+FD+S G+TG VEL ELDGPFV ISL+G+FWH R+MVLAR
Sbjct: 77  DLTEDNIHLVLSEARIELAQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLAR 136

Query: 92  IANYLKQRIPEILEVDIEDEKQLDDSPENF 121
           + NYLKQRIPEILEV+IEDEKQLDDSP NF
Sbjct: 137 LGNYLKQRIPEILEVNIEDEKQLDDSPANF 166