Miyakogusa Predicted Gene
- Lj5g3v0657170.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0657170.1 Non Characterized Hit- tr|I1L8Z5|I1L8Z5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26782
PE,66.38,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; RNA POLYMERASE SIGMA
FAC,NODE_31328_length_2005_cov_71.025932.path2.1
(565 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g101840.1 | RNA polymerase sigma factor | HC | chr7:410664... 673 0.0
Medtr1g063850.1 | RNA polymerase sigma factor | HC | chr1:280302... 624 e-179
Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778... 232 8e-61
Medtr3g033420.1 | RNA polymerase sigma factor | HC | chr3:106852... 173 5e-43
Medtr1g007370.1 | RNA polymerase sigma factor | HC | chr1:310765... 157 3e-38
Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01... 136 5e-32
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01... 136 5e-32
Medtr3g090900.1 | RNA polymerase sigma factor | HC | chr3:412740... 123 4e-28
Medtr3g090900.2 | RNA polymerase sigma factor | HC | chr3:412740... 95 1e-19
Medtr1g007370.2 | RNA polymerase sigma factor | HC | chr1:310765... 87 3e-17
Medtr3g090900.3 | RNA polymerase sigma factor | HC | chr3:412740... 83 7e-16
Medtr3g033150.1 | RNA polymerase sigma factor | HC | chr3:105390... 81 3e-15
>Medtr7g101840.1 | RNA polymerase sigma factor | HC |
chr7:41066429-41071150 | 20130731
Length = 557
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 415/555 (74%), Gaps = 22/555 (3%)
Query: 19 TVMML-HEQAVPAVSSWPSGIAAQHFPTSVLLQEQRDEYKPLLH-INKEDKTPQATSSMR 76
+VMM H+QA PA+SSWP+ FPTSVLLQE RDEYKPLLH N+++K PQAT + R
Sbjct: 17 SVMMPPHDQAAPALSSWPTT-----FPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLNTR 71
Query: 77 PMDVALVQEKNNTGNADEL------VHNFMQQLHLRCHLQNLLSSSLTREIAASSTLQSI 130
D+ + EK TG+ D VHN M QLHLRCHLQNLL+SS E SS+ S
Sbjct: 72 VTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASS-PEEDFVSSSSSSS 130
Query: 131 TDDSERSPDGLQWNXXXXXXXXXXXXXXXXXXXXXXKLIEADDDDNDDSLPFGLASTCFP 190
+ + DG QW+ KL++ DDDD SLP GLA
Sbjct: 131 SSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDD---SLPLGLA----- 182
Query: 191 DSSVRRNKIVRSTRLXXXXXXXXXXXXXXVLDDESYLTRKSDVQGRLRVEKKLKEGLDQN 250
DSS+ +NKIVRS RL VLDDE YLT+KS+VQ RLR+EKKLKEGLD N
Sbjct: 183 DSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLDGN 242
Query: 251 DPLRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL 310
LR+FLW PETK+LL+ EEESQLI+QIQ+LF+L+E KI+LQS FGREPT+AEWADGVGL
Sbjct: 243 HALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGL 302
Query: 311 SCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFK 370
SC LQ +L G RSK+KLIHANLR+VVH+AK Y GRGLS QDLLQEGSMGLM+SVEKFK
Sbjct: 303 SCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFK 362
Query: 371 PQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTK 430
PQAGCRF++YAYWWIRQTIRRALFLHS+TIRLPEN Y LLGK+ EAKK Y +EGN+HPTK
Sbjct: 363 PQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTK 422
Query: 431 EELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLM 490
EE+A+++G+TVD+LE+LL + R PLSM++ VW D DTT+QEITAD++IE P+V VAKQLM
Sbjct: 423 EEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLM 482
Query: 491 RRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 550
R H RNLL L P+ER+++RLRFGIEDGYEKSL+EIG V G+ KERVRQLES+AL+KLKQ
Sbjct: 483 RSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQ 542
Query: 551 CLASHGLDAYANLLV 565
CL S LDAY +L+V
Sbjct: 543 CLVSQQLDAYVDLIV 557
>Medtr1g063850.1 | RNA polymerase sigma factor | HC |
chr1:28030240-28023352 | 20130731
Length = 561
Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust.
Identities = 314/547 (57%), Positives = 399/547 (72%), Gaps = 16/547 (2%)
Query: 19 TVMMLHEQAVPAVSSWPSGIAAQHFPTSVLLQEQRDEYKPLLHINKEDKTPQATSSMRPM 78
+V+ML EQ P V++W + ++Q+FPTSVLLQEQ DEY+PLLHI+K+DKT QAT + R M
Sbjct: 31 SVLMLREQVAPTVTAWCTSYSSQNFPTSVLLQEQCDEYRPLLHISKKDKTCQATLNTRQM 90
Query: 79 DVALVQEKNNTGNADELVHNFMQQLHLRCHLQNLLSSSLTREIAASSTLQSITDDSERSP 138
D+ VQEKN+T N D++ +F Q LHL L+NLL+SS T E+ SSTLQ
Sbjct: 91 DMVSVQEKNDTSNTDQVARDFRQHLHLLPRLENLLTSSQTGEMDGSSTLQH--------A 142
Query: 139 DGLQWNXXXXXXXXXXXXXXXXXXXXXXKLIEADDDDNDDSLPFGLASTCFPDSSVRRNK 198
D LQ N I+AD+D D+S+PFGLAS+ + + NK
Sbjct: 143 DSLQCNAVSLSKQAASVAEDLIS-------IKADED-ADNSIPFGLASSSSAEPLLGGNK 194
Query: 199 IVRSTRLXXXXXXXXXXXXXXVLDDESYLTRKSDVQGRLRVEKKLKEGLDQNDPLRMFLW 258
VRSTRL V D E+YL K + +L+V+KK+ +G++Q+DPL FL
Sbjct: 195 TVRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQ 254
Query: 259 GPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQ 318
PE+K+LLT E+ESQL+ QIQ L RLE++K LQSQFGREPTMAEWA+G GL+C ++ Q
Sbjct: 255 SPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQ 314
Query: 319 LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 378
LR G RS+EKLI ANLR+V ++AK+Y GRGLS +DLLQEGS GL+KS++KFK QAGCRFA
Sbjct: 315 LRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFA 374
Query: 379 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 438
SYAYWWI+Q IR+A++ HSRTIRLPE VY L K++EAKK Y EGN++PTKEELAR++G
Sbjct: 375 SYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELARRVG 434
Query: 439 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 498
++ DK++ LL ARIP+SMQ TV ++ DTT+QEITAD AIE+P++ VAKQLMRRH N+L
Sbjct: 435 ISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVLNVL 494
Query: 499 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 558
+ L P+ERRIIRLRFG EDG EKSLSEIG +FGLS+ERVRQLESRAL KLK+ L GLD
Sbjct: 495 NILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLKKYLVGQGLD 554
Query: 559 AYANLLV 565
AYA+LL+
Sbjct: 555 AYADLLI 561
>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
chr3:55377817-55374030 | 20130731
Length = 572
Score = 232 bits (591), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 193/314 (61%)
Query: 247 LDQNDPLRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 306
+D +DPLR T +LLT EE + IQ+L +LE+++ L + G +PT A+WA
Sbjct: 256 VDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWAT 315
Query: 307 GVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSV 366
G+ L+ +L G KEK+I +N+R+V+ VAKNY G G+S QDL+QEG GL++
Sbjct: 316 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 375
Query: 367 EKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNV 426
EK+ G +F++YA+WWI+Q +R++L + SRTIRLP ++ K+ EA+K E
Sbjct: 376 EKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGR 435
Query: 427 HPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVA 486
P EE+A G+++ +L +L + P S++Q V +Q E+ AD ET + +
Sbjct: 436 QPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLI 495
Query: 487 KQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 546
KQ M++ +L +LNPRE+++I+ RFG++DG K+L EIG + G+S+ER+RQ+ES A
Sbjct: 496 KQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFR 555
Query: 547 KLKQCLASHGLDAY 560
KLK + L Y
Sbjct: 556 KLKNKKRAKHLQQY 569
>Medtr3g033420.1 | RNA polymerase sigma factor | HC |
chr3:10685299-10683200 | 20130731
Length = 403
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 164/314 (52%), Gaps = 6/314 (1%)
Query: 249 QNDPLRM-FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADG 307
QN+ LR + G T L+ +E++L ++ ++E K R+ Q G +
Sbjct: 94 QNNFLRQKVVVGSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTEQEGNSAISRFTLEN 153
Query: 308 VGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVE 367
+ + T+ +SKE+L +V +A +Y G+GLS QDL+QEG++GL+ E
Sbjct: 154 TSVDKVLINTR-----KSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAE 208
Query: 368 KFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVH 427
KF P GC+ ++Y YWWI+Q I +AL SR IRLP Y ++ K+ EA R
Sbjct: 209 KFDPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRK 268
Query: 428 PTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAK 487
PT E+A + V V ++++ +R P+S+ +++ + +EI P+ V +
Sbjct: 269 PTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVER 328
Query: 488 QLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDK 547
QLM++ LL+TL+ RE I+RL FG+ S EIG + LS+ER+RQ+ AL K
Sbjct: 329 QLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSK 388
Query: 548 LKQCLASHGLDAYA 561
L+Q L Y
Sbjct: 389 LEQNTLVDSLKFYV 402
>Medtr1g007370.1 | RNA polymerase sigma factor | HC |
chr1:310765-306478 | 20130731
Length = 549
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 180/324 (55%), Gaps = 14/324 (4%)
Query: 248 DQNDPLRM----FL---WGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPT 300
+Q DPLR F+ + K+ + + E ++ ++ L LE+++ ++ + +
Sbjct: 232 NQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVS 291
Query: 301 MAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSM 360
++ WA+ G+ LQ QL G +++LI + +V++ A+ Y G G++ +DLLQ G +
Sbjct: 292 LSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYI 351
Query: 361 GLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFY 420
G+++ E+F G RF++Y +WIR+++ R + ++R I +P ++ + ++ +A+K
Sbjct: 352 GVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVL 411
Query: 421 NREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIET 480
+P E+A+ G+++DK+ R SM + + Y D +IE+
Sbjct: 412 KNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI------EYMGHMPDLSIES 465
Query: 481 PDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYE-KSLSEIGTVFGLSKERVRQ 539
P+ V KQ +++ ++L +L+ RER+II LRFG+ D ++ KSL IG +F +SKE +R+
Sbjct: 466 PEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRK 525
Query: 540 LESRALDKLKQCLASHGLDAYANL 563
+E +AL KL+ L+ Y +L
Sbjct: 526 IEKKALTKLRNETNISKLNYYLDL 549
>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
scaffold0172:25315-21123 | 20130731
Length = 504
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 166/313 (53%), Gaps = 8/313 (2%)
Query: 253 LRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 312
L+ ++ G +LL+ E +L +I+ L+E K RL+ + G EP+ + A + +S
Sbjct: 189 LKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISR 248
Query: 313 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 372
L+ ++ + ++EKL +N+R+V+ +A+ Y G DL+Q G +GL++ +EKF
Sbjct: 249 ADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSS 308
Query: 373 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 432
G + ++Y YWWIRQ + RAL +SRT+RLP +++ L LI ++ E + PT +
Sbjct: 309 KGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS-LIRNAEYKLEERGITPTIDR 367
Query: 433 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDT----TYQEITADTAIET-PDVYVAK 487
+A+ + ++ K+ A S+ + + + T+ AD E P V +
Sbjct: 368 IAKSLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDE 427
Query: 488 QLMRRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 546
++ L++ TL RER IIRL +G+ D + +I GLS+ERVRQ+ AL+
Sbjct: 428 WALKEEVNRLINLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 486
Query: 547 KLKQCLASHGLDA 559
KLK ++A
Sbjct: 487 KLKHAARKREMEA 499
>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
scaffold0172:25892-20750 | 20130731
Length = 504
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 166/313 (53%), Gaps = 8/313 (2%)
Query: 253 LRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 312
L+ ++ G +LL+ E +L +I+ L+E K RL+ + G EP+ + A + +S
Sbjct: 189 LKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISR 248
Query: 313 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 372
L+ ++ + ++EKL +N+R+V+ +A+ Y G DL+Q G +GL++ +EKF
Sbjct: 249 ADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSS 308
Query: 373 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 432
G + ++Y YWWIRQ + RAL +SRT+RLP +++ L LI ++ E + PT +
Sbjct: 309 KGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS-LIRNAEYKLEERGITPTIDR 367
Query: 433 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDT----TYQEITADTAIET-PDVYVAK 487
+A+ + ++ K+ A S+ + + + T+ AD E P V +
Sbjct: 368 IAKSLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDE 427
Query: 488 QLMRRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 546
++ L++ TL RER IIRL +G+ D + +I GLS+ERVRQ+ AL+
Sbjct: 428 WALKEEVNRLINLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 486
Query: 547 KLKQCLASHGLDA 559
KLK ++A
Sbjct: 487 KLKHAARKREMEA 499
>Medtr3g090900.1 | RNA polymerase sigma factor | HC |
chr3:41274049-41279255 | 20130731
Length = 514
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 152/292 (52%), Gaps = 9/292 (3%)
Query: 265 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 324
+L E + L +Q + L +VK LQ + REPT E AD + ++ + G
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275
Query: 325 SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 381
++ KLI NLR+V+ V Y FQDL Q G GL+ S+++F+P R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335
Query: 382 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 441
+WIR I R++ L S + R+P + ++ ++ AK + + PT+EE+ K+ V+
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394
Query: 442 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQ--LMRRHARNLLH 499
++ ++ A++ LS+ T Q+ + I D +Q L+R ++L
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQE---EFINGVVDDGGVDGDNRRQPALLRLALDDVLD 451
Query: 500 TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQC 551
+L P+E +IR RFG++ +++L EI + +S+E VR+ E +AL KLK
Sbjct: 452 SLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHS 503
>Medtr3g090900.2 | RNA polymerase sigma factor | HC |
chr3:41274049-41279255 | 20130731
Length = 459
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Query: 265 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 324
+L E + L +Q + L +VK LQ + REPT E AD + ++ + G
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275
Query: 325 SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 381
++ KLI NLR+V+ V Y FQDL Q G GL+ S+++F+P R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335
Query: 382 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 441
+WIR I R++ L S + R+P + ++ ++ AK + + PT+EE+ K+ V+
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394
Query: 442 DKLEILLSAARIPLSMQQTVWTDQD 466
++ ++ A++ LS+ T Q+
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQE 419
>Medtr1g007370.2 | RNA polymerase sigma factor | HC |
chr1:310765-306479 | 20130731
Length = 400
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 248 DQNDPLRM----FL---WGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPT 300
+Q DPLR F+ + K+ + + E ++ ++ L LE+++ ++ + +
Sbjct: 232 NQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVS 291
Query: 301 MAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSM 360
++ WA+ G+ LQ QL G +++LI + +V++ A+ Y G G++ +DLLQ G +
Sbjct: 292 LSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYI 351
Query: 361 GLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLP 403
G+++ E+F G RF++Y +WIR+++ R + ++R I +P
Sbjct: 352 GVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVP 394
>Medtr3g090900.3 | RNA polymerase sigma factor | HC |
chr3:41274049-41279196 | 20130731
Length = 403
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 265 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 324
+L E + L +Q + L +VK LQ + REPT E AD + ++ + G
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275
Query: 325 SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 381
++ KLI NLR+V+ V Y FQDL Q G GL+ S+++F+P R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335
Query: 382 YWWIRQTIRRALFLHSRTIRLP---ENVYTLL 410
+WIR I R++ L S + R+P E+V LL
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVCILL 366
>Medtr3g033150.1 | RNA polymerase sigma factor | HC |
chr3:10539070-10538516 | 20130731
Length = 154
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%)
Query: 409 LLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTT 468
++ K+ EA R PT E+A + V V ++++ +R P+S+ +++ +
Sbjct: 1 MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 60
Query: 469 YQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGT 528
+EI P+ V +QLM++ LL+TL+ RE I+RL FG+ S EIG
Sbjct: 61 LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 120
Query: 529 VFGLSKERVRQLESRALDKLKQCLASHGLDAYA 561
+ LS+ER+RQ+ AL KL+Q L Y
Sbjct: 121 LLKLSRERIRQIHGIALSKLRQNTIVDSLKFYV 153