Miyakogusa Predicted Gene

Lj5g3v0657170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0657170.1 Non Chatacterized Hit- tr|I1L8Z5|I1L8Z5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26782
PE,66.38,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; RNA POLYMERASE SIGMA
FAC,NODE_31328_length_2005_cov_71.025932.path2.1
         (565 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...   494   e-140
AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...   248   8e-66
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit ...   157   2e-38
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:442913...   156   3e-38
AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   142   8e-34
AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   126   5e-29
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr...   125   7e-29

>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/547 (49%), Positives = 351/547 (64%), Gaps = 30/547 (5%)

Query: 20  VMMLHEQAV-PAVSSWPSGIAAQHFPTSVLLQEQRDEYKPLLHINKEDKTPQATSSMRPM 78
           V+MLH+Q   P V+S      ++HFP SVL QE R+E +PL H  ++D+T Q T   R  
Sbjct: 30  VVMLHDQTTTPVVNSRHLNSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQF 89

Query: 79  DVALVQEKNNTGNADELVHNFMQQLHLRCHLQNLLSSSLTREIAASSTLQSITDDSERSP 138
           D  LV  + +          F QQL     L NLL S LT E    + +  + D      
Sbjct: 90  D-ELVSSRED--------EKFEQQLLHSTGLWNLLISPLTSETKLPAVVSPLADA----- 135

Query: 139 DGLQWNXXXXXXXXXXXXXXXXXXXXXXKLIEADDDDNDDSLPFGLASTCFPDSSVRRNK 198
                                          EA+  DN        +S   P+    +  
Sbjct: 136 -----ELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPE----KGN 186

Query: 199 IVRSTRLXXXXXXXXXXXXXXVLDDESYLTRKSDVQGRLRVEKKLKEGLDQNDPLRMFLW 258
           IVRS R                +DDE Y+ +K+  +      KK K+G D +D L++FLW
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAK------KKYKQGADNDDALQLFLW 240

Query: 259 GPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQ 318
           GPETK+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S   L++ 
Sbjct: 241 GPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSD 300

Query: 319 LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 378
           +  G  S+EKLI ANLR+VVH+AK Y  RGL+FQDLLQEGSMGLMKSVEKFKPQ+GCRFA
Sbjct: 301 IHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFA 360

Query: 379 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 438
           +YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K   +EGN  P+KEELA  +G
Sbjct: 361 TYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVG 420

Query: 439 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 498
           V+ +KL+ LL   R PLSMQQ +W+DQDTT+QEIT D+ IETP + V KQLMR H RNLL
Sbjct: 421 VSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLL 480

Query: 499 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 558
           + L+P+ERRII+LRFGI+ G ++SLSEIG ++GLSKERVRQLESRAL +LKQ + SHGL 
Sbjct: 481 NVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLH 540

Query: 559 AYANLLV 565
           AYA+LLV
Sbjct: 541 AYADLLV 547


>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score =  248 bits (633), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 124/314 (39%), Positives = 195/314 (62%)

Query: 247 LDQNDPLRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWAD 306
           +D NDPLR       + KLLT  EE +L + IQ+L +LE ++  L  + GR+PT A+WA 
Sbjct: 254 VDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWAS 313

Query: 307 GVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSV 366
             G+   +L+ ++  GT  K+K+I +N+R+V+ +AKNY G G++ QDL+QEG  GL++  
Sbjct: 314 AAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 373

Query: 367 EKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNV 426
           EKF    G +F++YA+WWI+Q +R++L   SR IRLP ++     ++ EA+K    E   
Sbjct: 374 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGK 433

Query: 427 HPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVA 486
           HP  EE+A   G+++ +L  +L + + P S+ Q +  +Q+    E+ AD    T +  + 
Sbjct: 434 HPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILI 493

Query: 487 KQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 546
           K+ MR+    +L +L  RE+++IR RFG+EDG  K+L EIG + G+S+ERVRQ+ES A  
Sbjct: 494 KEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFR 553

Query: 547 KLKQCLASHGLDAY 560
           KLK    ++ L  Y
Sbjct: 554 KLKNKKRNNHLQQY 567


>AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C |
           chr3:19961041-19963820 REVERSE LENGTH=571
          Length = 571

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 167/293 (56%), Gaps = 1/293 (0%)

Query: 271 ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKLI 330
           E+++ + ++ +  +E ++ +L+ + G+  +++ WA   G++   L   L  G   +++L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337

Query: 331 HANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIR 390
            +   +V+ +A+NY G G++ +DL+Q G +G+++  E+F    G +F++Y  +WIR+++ 
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397

Query: 391 RALFLHSRTIRLPENVYTLLGKLIEAKK-FYNREGNVHPTKEELARKIGVTVDKLEILLS 449
             +  H+R + +P ++   +  + +A+K      G  +   EE+A+  G +V K+     
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457

Query: 450 AARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRII 509
             ++  S+ + V     T + E T DT +E+P+  V +Q  RR   +LL  L PRE++++
Sbjct: 458 CLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVM 517

Query: 510 RLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYAN 562
            LR+G++D   KSL EIG +  +SKE +R++E RA+ KL+    +  L  Y N
Sbjct: 518 VLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570


>AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 |
           chr5:4429132-4430744 REVERSE LENGTH=419
          Length = 419

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%)

Query: 325 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 384
           ++EK+     R+VV +A  Y G+GL+ QDL+QEGS+GL++  E+F P  G + ++Y YWW
Sbjct: 179 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 238

Query: 385 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 444
           I+Q I RA+   SR ++LP +++ L  K+ EA     R+    P+ EE+A  + + V  +
Sbjct: 239 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAV 298

Query: 445 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 504
            + +  +R P+S+ +    +   T QEI        P+  V ++ M+     LL +L  R
Sbjct: 299 RLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTAR 358

Query: 505 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 560
           E R++ L FG+      S  EIG    LS+ERVRQ+   AL KL+     + L  Y
Sbjct: 359 ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414


>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 253 LRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 312
           +R ++ G  ++ +L+  E  +L  +I++  RL++ K RL+ + G EP+  + A  + +S 
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246

Query: 313 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 372
             LQ  L     ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF   
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSS 306

Query: 373 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 432
            G R ++Y YWWIRQ + RAL  +SRT+RLP +++  LG LI   K   +E  + P+ + 
Sbjct: 307 KGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDR 365

Query: 433 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDT----TYQEITADTAIETPDVYVAKQ 488
           +A  + ++  K+     A     S+ +  +   +     T+    ADT +E    +    
Sbjct: 366 IAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDD 425

Query: 489 L-MRRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 546
           L ++     L+  TL  RE+ IIRL +G+ D    +  +I    GLS+ERVRQ+   AL+
Sbjct: 426 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 484

Query: 547 KLKQCLASHGLDA 559
           KLK       ++A
Sbjct: 485 KLKHAARKRKMEA 497


>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 145/270 (53%), Gaps = 7/270 (2%)

Query: 253 LRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 312
           +R ++ G  ++ +L+  E  +L  +I++  RL++ K RL+ + G EP+  + A  + +S 
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246

Query: 313 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 372
             LQ  L     ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF   
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSS 306

Query: 373 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 432
            G R ++Y YWWIRQ + RAL  +SRT+RLP +++  LG LI   K   +E  + P+ + 
Sbjct: 307 KGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDR 365

Query: 433 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDT----TYQEITADTAIETPDVYVAKQ 488
           +A  + ++  K+     A     S+ +  +   +     T+    ADT +E    +    
Sbjct: 366 IAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDD 425

Query: 489 L-MRRHARNLLH-TLNPRERRIIRLRFGIE 516
           L ++     L+  TL  RE+ IIRL +G++
Sbjct: 426 LALKEEVSKLISATLGEREKEIIRLYYGLD 455


>AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
           chr5:8157794-8159746 REVERSE LENGTH=517
          Length = 517

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 11/292 (3%)

Query: 265 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 324
           +L+  E + L   +Q +  L EVK  LQ   GREP  AE A  + ++   ++ ++  G  
Sbjct: 219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRA 278

Query: 325 SKEKLIHANLRMVVHVAKNY---LGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 381
           ++ KLI  NLR+V+ V   Y      G  FQDL Q G  GL+ ++++F+P+   R ++Y 
Sbjct: 279 ARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYG 338

Query: 382 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 441
            +WIR  I R++   + T R+P  + ++  ++ +AK     E    PT++E+  ++ +T 
Sbjct: 339 LFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITP 397

Query: 442 DKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQ--LMRRHARNLL 498
           ++   +L AA+  LS+     +    T +E I   T ++      ++Q  L+R    ++L
Sbjct: 398 ERYREVLRAAKPVLSLN----SKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVL 453

Query: 499 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 550
            +L P+E  +IR R+G++   +++L EI     +S+E VR+ E +AL KLK 
Sbjct: 454 DSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 505