Miyakogusa Predicted Gene
- Lj5g3v0657170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0657170.1 Non Chatacterized Hit- tr|I1L8Z5|I1L8Z5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26782
PE,66.38,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; RNA POLYMERASE SIGMA
FAC,NODE_31328_length_2005_cov_71.025932.path2.1
(1698 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68761 similar to UniRef100_A7PT61 Cluster: Chromosome... 1790 0.0
gnl|LJGI|TC70032 homologue to UniRef100_A7PT60 Cluster: Chromoso... 1031 0.0
gnl|LJGI|CN825552 weakly similar to UniRef100_A7PT61 Cluster: Ch... 274 2e-72
gnl|LJGI|TC61598 weakly similar to UniRef100_Q9LD95 Cluster: Sig... 161 2e-38
>gnl|LJGI|TC68761 similar to UniRef100_A7PT61 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 961
Score = 1790 bits (903), Expect = 0.0
Identities = 910/911 (99%), Gaps = 1/911 (0%)
Strand = Plus / Plus
Query: 789 gaaacttttgacctttgaagaagagtctcaattgatttctcagatacagaatttgttcag 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaacttttgacctttgaagaagagtctcaattgatttctcagatacagaatttgttcag 60
Query: 849 attggaagaagtgaagatcaggcttcaatctcagtttgggcgtgaaccaactatggctga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggaagaagtgaagatcaggcttcaatctcagtttgggcgtgaaccaactatggctga 120
Query: 909 atgggcagatggtgtgggtcttagctgttatgccctgcagacacagcttcgtagt-ggta 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 atgggcagatggtgtgggtcttagctgttatgccctgcagacacagcttcgtagttggta 180
Query: 968 caagaagcaaggaaaagctgattcatgccaatttacgcatggtagttcatgttgctaaaa 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagaagcaaggaaaagctgattcatgccaatttacgcatggtagttcatgttgctaaaa 240
Query: 1028 attatctggggcgtggtctcagctttcaggacttattgcaggagggaagtatgggtctca 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attatctggggcgtggtctcagctttcaggacttattgcaggagggaagtatgggtctca 300
Query: 1088 tgaagagcgttgaaaagtttaaaccccaagctggttgccggttcgcttcttacgcttact 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaagagcgttgaaaagtttaaaccccaagctggttgccggttcgcttcttacgcttact 360
Query: 1148 ggtggataaggcaaacaataaggagggccttatttctacattctaggacgatccgtcttc 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtggataaggcaaacaataaggagggccttatttctacattctaggacgatccgtcttc 420
Query: 1208 cggagaatgtttacacccttttgggcaagctcatcgaagcaaagaaattctacaatagag 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cggagaatgtttacacccttttgggcaagctcatcgaagcaaagaaattctacaatagag 480
Query: 1268 aaggaaatgttcaccccacaaaagaagaattagcaagaaaaataggagttacagtagaca 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaggaaatgttcaccccacaaaagaagaattagcaagaaaaataggagttacagtagaca 540
Query: 1328 agttggaaatattgctatctgctgccagaattccactttcgatgcagcaaacggtgtgga 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agttggaaatattgctatctgctgccagaattccactttcgatgcagcaaacggtgtgga 600
Query: 1388 cagaccaggatacaacttaccaggagattactgcagacaccgcaattgagaccccagatg 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaccaggatacaacttaccaggagattactgcagacaccgcaattgagaccccagatg 660
Query: 1448 tgtatgttgcaaaacagctaatgaggcgtcacgcgcgcaaccttctacataccttaaacc 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtatgttgcaaaacagctaatgaggcgtcacgcgcgcaaccttctacataccttaaacc 720
Query: 1508 caagagaaaggaggataatcaggctaagatttggcattgaagatggctacgagaaatctt 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caagagaaaggaggataatcaggctaagatttggcattgaagatggctacgagaaatctt 780
Query: 1568 tgtcagaaattggcactgtatttggtttgtctaaggagagggtccgacagttggagagcc 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgtcagaaattggcactgtatttggtttgtctaaggagagggtccgacagttggagagcc 840
Query: 1628 gagcattggataagctcaagcagtgccttgctagtcatggacttgatgcatatgcaaact 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gagcattggataagctcaagcagtgccttgctagtcatggacttgatgcatatgcaaact 900
Query: 1688 tgcttgtatag 1698
|||||||||||
Sbjct: 901 tgcttgtatag 911
>gnl|LJGI|TC70032 homologue to UniRef100_A7PT60 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 738
Score = 1031 bits (520), Expect = 0.0
Identities = 577/602 (95%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 1 atgaacgccgctaagagcatgttttcttcttcatctccaccgttttcttcacctacagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atgaacgccgctaagagcatgttttcttcttcatctccaccgttttcttcacctacagtt 194
Query: 61 atgatgcttcatgaacaagctgttcctgctgtttcttcttggccttctggtattgcagca 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 195 atgatgcttcatgaacaagctgtgcctgctgtttcttcttggccttctggtattgcagca 254
Query: 121 cagcattttcctacttcagttcttttgcaagagcagcgtgatgagtataagcctctactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagcattttcctacttcagttcttttgcaagagcagcgtgatgagtataagcctctactt 314
Query: 181 cacatcaataaggaagataagacaccccaggcgacttcgagtatgaggccgatggatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacatcaataaggaagataagacaccccaggcgacttcgagtatgaggccgatggatgtg 374
Query: 241 gccttagttcaagagaagaacaacactggcaatgctgatgagttagtgcacaactttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gccttagttcaagagaagaacaacactggcaatgctgatgagttagtgcacaactttatg 434
Query: 301 cagcagttgcatctccggtgtcatttgcagaacttattgagttcttcgctaaccagggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagcagttgcatctccggtgtcatttgcagaacttattgagttcttcgctaaccagggaa 494
Query: 361 attgctgcttcttcgactctgcaatctattactgatgattcagagcggtctccggatggc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atggctgcttcttcgactctgcaatctattactgatgattcagagcggtctccggatggc 554
Query: 421 cttcaatggaatgcagtttctcttgctaagcaagctttgtcagcctcaaaacaagcagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttcaatggaatgcagtttctcttgctaagcaagctttgtcagcctcaaaacaagcagct 614
Query: 481 gcagtagctgaggagtcgaaacttattgaagcnnnnnnnnnnnnnnnnnnnnnntcactt 540
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 615 gcagtagctgaggagtcgaaacttattgaagctgatgatgatgataatgatgattcactt 674
Query: 541 cctttcggtctggcctccacatgtttccccgactcttcagttagaaggaataaaattgtg 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 675 cctttcggtctggcctccacatgtttccccgactcttcagttagaa-gaataaaattgtg 733
Query: 601 ag 602
||
Sbjct: 734 ag 735
>gnl|LJGI|CN825552 weakly similar to UniRef100_A7PT61 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (80%)
Length = 717
Score = 274 bits (138), Expect = 2e-72
Identities = 483/598 (80%)
Strand = Plus / Plus
Query: 849 attggaagaagtgaagatcaggcttcaatctcagtttgggcgtgaaccaactatggctga 908
|||||||||| |||||| ||| ||||||||||| |||||| | |||||||||||||||||
Sbjct: 36 attggaagaattgaagaccagtcttcaatctcaatttgggagagaaccaactatggctga 95
Query: 909 atgggcagatggtgtgggtcttagctgttatgccctgcagacacagcttcgtagtggtac 968
|||||| || |||| || |||| ||| || ||||| | |||||||| |||| |
Sbjct: 96 atgggctgagggtgcaggacttaaatgtcgagcgctgcaaatgaagcttcgttgtggcaa 155
Query: 969 aagaagcaaggaaaagctgattcatgccaatttacgcatggtagttcatgttgctaaaaa 1028
||||||| |||||||||||| | || ||||| ||||||||| | |||||||||||||
Sbjct: 156 cagaagcagagaaaagctgattaaagcaaatttgcgcatggtactccatgttgctaaaac 215
Query: 1029 ttatctggggcgtggtctcagctttcaggacttattgcaggagggaagtatgggtctcat 1088
||| | |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct: 216 ttaccaggggcgtggtctcagccttcaggacttattacaggagggaagtatgggtctttt 275
Query: 1089 gaagagcgttgaaaagtttaaaccccaagctggttgccggttcgcttcttacgcttactg 1148
|||||| ||| |||||||||| ||||||| |||||||| || | | ||| || || ||
Sbjct: 276 gaagagtgttaaaaagtttaagccccaagtgggttgccgatttggtagttatgcatattg 335
Query: 1149 gtggataaggcaaacaataaggagggccttatttctacattctaggacgatccgtcttcc 1208
|||||||| |||| ||||||||| |||| |||||| ||||| ||||| |||||| | ||
Sbjct: 336 gtggataaagcaagcaataaggaaggccatatttcatcattcgaggacaatccgtttgcc 395
Query: 1209 ggagaatgtttacacccttttgggcaagctcatcgaagcaaagaaattctacaatagaga 1268
||| || || || |||| |||||||| | | || ||||||||||| |||| | |||
Sbjct: 396 ggaaaaggtatatacccagttgggcaaaatattggaggcaaagaaattatacattcaaga 455
Query: 1269 aggaaatgttcaccccacaaaagaagaattagcaagaaaaataggagttacagtagacaa 1328
|| ||| ||| ||| || |||||||| || ||||||| ||||| || ||| ||||||
Sbjct: 456 gggcaatcttcgcccaaccaaagaagatttggcaagaagggtaggaatttcagaagacaa 515
Query: 1329 gttggaaatattgctatctgctgccagaattccactttcgatgcagcaaacggtgtggac 1388
| | | ||||||| || ||||||||||||| | || ||||||||||| || |||||
Sbjct: 516 gatttccagtttgctatatgttgccagaattccaatgtctatgcagcaaactgtatggac 575
Query: 1389 agaccaggatacaacttaccaggagattactgcagacaccgcaattgagaccccagat 1446
||||| ||||||||| ||||||||||||||||||||| |||| ||| ||||||||
Sbjct: 576 tgaccaaaatacaactttccaggagattactgcagacacttcaatcgagtccccagat 633
>gnl|LJGI|TC61598 weakly similar to UniRef100_Q9LD95 Cluster: Sigma factor-like
protein; n=2; Arabidopsis thaliana|Rep: Sigma factor-like
protein - Arabidopsis thaliana (Mouse-ear cress), partial
(24%)
Length = 737
Score = 161 bits (81), Expect = 2e-38
Identities = 293/361 (81%), Gaps = 2/361 (0%)
Strand = Plus / Plus
Query: 1339 ttgctatctgctgccagaattccactttcgatgcagcaaacggtgtggacagaccaggat 1398
||||||| || ||||||||||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 48 ttgctatatgttgccagaattccaatgtctatgcagcaaactgtatggactgaccaaaat 107
Query: 1399 acaacttaccaggagattactgcagacaccgcaattgagaccccagatgtgtat-gttgc 1457
||||||| ||||||||||||||||||||| |||| ||| |||||||| ||| ||| |
Sbjct: 108 acaactttccaggagattactgcagacacttcaatcgagtccccagata-gtagcgtttc 166
Query: 1458 aaaacagctaatgaggcgtcacgcgcgcaaccttctacataccttaaacccaagagaaag 1517
|||| |||| |||||||| || | || ||| || ||| || || ||| | ||||||
Sbjct: 167 aaaagagcttatgaggcggcatgtgctcaatctactaagcacgctacgcccgaaagaaag 226
Query: 1518 gaggataatcaggctaagatttggcattgaagatggctacgagaaatctttgtcagaaat 1577
|||||||||| ||||||||||||| |||| ||||| | | |||||||| |||||| |
Sbjct: 227 gaggataatccggctaagatttggttttgaggatggagaacaaaaatctttatcagaagt 286
Query: 1578 tggcactgtatttggtttgtctaaggagagggtccgacagttggagagccgagcattgga 1637
||| ||||||||||||| ||||| |||||||| |||||||||| ||| || || |
Sbjct: 287 tggagagatatttggtttgtccaaggaaagggtccgtcagttggagaaccgcgcgttcta 346
Query: 1638 taagctcaagcagtgccttgctagtcatggacttgatgcatatgcaaacttgcttgtata 1697
||||||||| |||||||||| || || ||||||||||| |||||| |||||||||||||
Sbjct: 347 caagctcaagaagtgccttgcaagccaaggacttgatgcttatgcagacttgcttgtata 406
Query: 1698 g 1698
|
Sbjct: 407 g 407