Miyakogusa Predicted Gene

Lj5g3v0615200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0615200.1 Non Chatacterized Hit- tr|B4FY86|B4FY86_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,32.87,7e-18,seg,NULL,CUFF.53421.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39370.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    98   9e-21
AT2G37380.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    84   2e-16

>AT2G39370.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins
           in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9;
           Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes -
           14 (source: NCBI BLink). | chr2:16444280-16445266
           REVERSE LENGTH=328
          Length = 328

 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 152/325 (46%), Gaps = 60/325 (18%)

Query: 13  VDEDYIDMELXXXXXXXXXXXXXXXXXXPPQNSEFEFQMISVSN-EKDSKPSPADDLFYK 71
           V+EDYIDME+                   P+  EFEFQM  +   E D   SPAD+LFYK
Sbjct: 11  VEEDYIDMEVTSFTNLVRKTLSNNY----PR--EFEFQMSHLCPLEIDKTTSPADELFYK 64

Query: 72  GKLLPLHSPPRLQMVQKLIENSNNATFD--------FVKSQSDLEDSSFPFTSDFRTPSE 123
           GKLLPLH PPRLQMVQK++E   + TFD           + +    S+ PF S   +P+E
Sbjct: 65  GKLLPLHLPPRLQMVQKILE---DYTFDDEFYSTPLATGTVTTPVTSNTPFESCTVSPAE 121

Query: 124 SCRVSSEVANPDELLYPFGWSSGLVGDDXXXXXXXXXXXXXXXFWLSQKLKASRVYLKSF 183
           SC+VS E+ NP++  Y   +S  L  DD                 L  K+KASR YL+SF
Sbjct: 122 SCQVSKEL-NPED--YFLEYSDSLEEDDEKKKSWTTKLRLMKQSSLGTKIKASRAYLRSF 178

Query: 184 FSKSGCSDK-SCASAATNVGAERDSNCKECQNKYMKVNPRKNCKNPFEIFYDEKHHMSCN 242
           F K+ CSD+ SCAS+A  V A+ DS       +Y +V P    K        E+     N
Sbjct: 179 FGKTSCSDESSCASSAARV-ADEDSVL-----RYSRVKPFGQIKT-------ERPKKQSN 225

Query: 243 VMKTIKREIFEDDFTSNHRKSFSGVVQRHCVXXXXXXXXXXXXXXXXXXXXXXXXAGYYD 302
                         + +HR+SFS  ++R                            G+  
Sbjct: 226 -----------GSVSGSHRRSFSVSMRRQAAKSSNNKSSNSL--------------GFRP 260

Query: 303 LQLFKRSISANYELEGSVEGAIAHC 327
           LQ  KRS S++ E+E S++GAI HC
Sbjct: 261 LQFLKRSTSSSSEIENSIQGAILHC 285


>AT2G37380.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G39370.1); Has 1284 Blast hits to 422 proteins
           in 114 species: Archae - 0; Bacteria - 90; Metazoa -
           125; Fungi - 151; Plants - 136; Viruses - 0; Other
           Eukaryotes - 782 (source: NCBI BLink). |
           chr2:15686828-15687793 FORWARD LENGTH=321
          Length = 321

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 134/322 (41%), Gaps = 56/322 (17%)

Query: 14  DEDYIDMEL-----XXXXXXXXXXXXXXXXXXPPQNSEFEFQMISVS-NEKDSKPSPADD 67
           D+ YIDME+                       PPQ+ EFEFQM S +    +S  SPAD+
Sbjct: 18  DDGYIDMEVNLSSSSSSSTSSSSFFSFPVTSSPPQSREFEFQMCSSAVASGESTTSPADE 77

Query: 68  LFYKGKLLPLHSPPRLQMVQKLIENSNNATFDFVKSQSDLEDSSFPFTSDFRTPSESCRV 127
           LFYKG+LLPLH PPRL+MVQKL+  S+++T     +++ +   +    +D  +P    R 
Sbjct: 78  LFYKGQLLPLHLPPRLKMVQKLLLASSSST---AATETPISPRA---AADVLSPR---RF 128

Query: 128 SS-EVANPDELLYPFGWSSGLVGDDXXXXXXXXXXXXXXXFWLSQKLKASRVYLKSFFSK 186
           SS E+   +   +          +                  ++QKLKASR Y+K+ FSK
Sbjct: 129 SSCEIGQDENCFFEISTELKRFIESNENHLGNSWSKKIKHSSITQKLKASRAYIKALFSK 188

Query: 187 SGCSDKSCASAATNVGAERDSNCKECQNKYMKVNPRKNCKNPFEIFYDEKHHMSCNVMKT 246
             CSD S  +    +   + S          K NP  N +NP  I               
Sbjct: 189 QACSDSSEINPRFKIEPSKVSR---------KKNPFVNSENPLLI--------------- 224

Query: 247 IKREIFEDDFTSNHRKSFSGVVQRHCVXXXXXXXXXXXXXXXXXXXXXXXXAGYYDLQLF 306
                        HR+SFSGV+QRH                           G  DLQ  
Sbjct: 225 -------------HRRSFSGVIQRHSQAKCSTSSSSSSSASSLSSSFSFGSNGSLDLQTL 271

Query: 307 KRSISANYELEGSVEGAIAHCK 328
            RS +A+   + S+EGAI HCK
Sbjct: 272 MRSSNAS---DNSIEGAIEHCK 290