Miyakogusa Predicted Gene
- Lj5g3v0539710.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0539710.2 Non Chatacterized Hit- tr|C6TLC4|C6TLC4_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,95.05,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Helicase_C,Helicase, C-terminal; helicase superfami,CUFF.53243.2
(312 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63543 similar to UniRef100_Q0JM17 Cluster: DEAD-box A... 611 e-174
gnl|LJGI|TC70039 similar to UniRef100_Q0JM17 Cluster: DEAD-box A... 601 e-171
gnl|LJGI|TC78076 homologue to UniRef100_A9SV98 Cluster: Predicte... 365 e-100
gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box... 133 7e-31
gnl|LJGI|BP062814 similar to UniRef100_A1T4C7 Cluster: Glycogen/... 68 3e-11
>gnl|LJGI|TC63543 similar to UniRef100_Q0JM17 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 56 - Oryza sativa
subsp. japonica (Rice), partial (23%)
Length = 884
Score = 611 bits (308), Expect = e-174
Identities = 311/312 (99%)
Strand = Plus / Plus
Query: 1 atgaagttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgaagttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaaca 306
Query: 61 gatttggttggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 307 gatttggttggtaggggaattgacattgaacgtgtgaatatagtcataaattatgacatg 366
Query: 121 cctgattctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctgattctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaa 426
Query: 181 ggtcttgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggtcttgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaa 486
Query: 241 tccaggtttgaggtggatataaaacagcttcctgagcagattgatacatctacctacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccaggtttgaggtggatataaaacagcttcctgagcagattgatacatctacctacatg 546
Query: 301 ccatcttagtaa 312
||||||||||||
Sbjct: 547 ccatcttagtaa 558
>gnl|LJGI|TC70039 similar to UniRef100_Q0JM17 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 56 - Oryza sativa
subsp. japonica (Rice), partial (23%)
Length = 903
Score = 601 bits (303), Expect = e-171
Identities = 306/307 (99%)
Strand = Plus / Plus
Query: 6 gttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagattt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gttgaagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagattt 364
Query: 66 ggttggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatgcctga 125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 365 ggttggtaggggaattgacattgaacgtgtgaatatagtcataaattatgacatgcctga 424
Query: 126 ttctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttctgcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtct 484
Query: 186 tgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatccag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgcaattacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatccag 544
Query: 246 gtttgaggtggatataaaacagcttcctgagcagattgatacatctacctacatgccatc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtttgaggtggatataaaacagcttcctgagcagattgatacatctacctacatgccatc 604
Query: 306 ttagtaa 312
|||||||
Sbjct: 605 ttagtaa 611
>gnl|LJGI|TC78076 homologue to UniRef100_A9SV98 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(40%)
Length = 822
Score = 365 bits (184), Expect = e-100
Identities = 268/296 (90%)
Strand = Plus / Plus
Query: 10 aagcgttataagggttttaaggaggggcagacaaggattcttgtagcaacagatttggtt 69
||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 221 aagcgttataaaggtttcaaggaggggcatacaaggattctggtggcaacagatttggtt 280
Query: 70 ggtaggggaattgacattgaacgtgtgaatatagtcataaatcatgacatgcctgattct 129
|||||||| ||||||||||| || || ||||| || |||||| |||||||||||||||||
Sbjct: 281 ggtagggggattgacattgagcgagtcaatatcgttataaattatgacatgcctgattct 340
Query: 130 gcagacacatatttgcacagggttggccgagctggaaggtttggcaccaaaggtcttgca 189
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 341 gctgacacatatttacacagggttggccgagctggaagatttggcaccaaaggccttgca 400
Query: 190 attacatttgtttcatgtgctacagatgttgatgttctcaacaatgttcaatccaggttt 249
|| ||||||||||||||| || | || || |||||||| |||||||| || || ||||||
Sbjct: 401 atcacatttgtttcatgttctgctgacgtcgatgttctaaacaatgtccagtcaaggttt 460
Query: 250 gaggtggatataaaacagcttcctgagcagattgatacatctacctacatgccatc 305
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 461 gaggtggatataaagcagcttcctgagcagattgatacctctacctacatgccatc 516
>gnl|LJGI|TC58050 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box ATP-dependent RNA
helicase 56; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 56 - Arabidopsis thaliana
(Mouse-ear cress), partial (98%)
Length = 1731
Score = 133 bits (67), Expect = 7e-31
Identities = 136/159 (85%)
Strand = Plus / Plus
Query: 42 aaggattcttgtagcaacagatttggttggtaggggaattgacattgaacgtgtgaatat 101
|||||||||||| ||||||||||| || || ||||| ||||| || |||||||| |||||
Sbjct: 1102 aaggattcttgtggcaacagatttagtaggaagggggattgatatagaacgtgttaatat 1161
Query: 102 agtcataaatcatgacatgcctgattctgcagacacatatttgcacagggttggccgagc 161
||||||||| ||||||||||||||||||| || || ||| | ||||||||||| ||||
Sbjct: 1162 agtcataaactatgacatgcctgattctgctgatacttatctacacagggttggaagagc 1221
Query: 162 tggaaggtttggcaccaaaggtcttgcaattacatttgt 200
||| || ||||| ||||| || ||||||||||| |||||
Sbjct: 1222 tggcagatttgggaccaaggggcttgcaattacttttgt 1260
>gnl|LJGI|BP062814 similar to UniRef100_A1T4C7 Cluster: Glycogen/starch/alpha-glucan
phosphorylases; n=1; Mycobacterium vanbaalenii
PYR-1|Rep:, partial (1%)
Length = 509
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 247 tttgaggtggatataaaacagcttcctgagcagattgatacatctaccta 296
|||||||||||||||||||| |||| ||||||||||| |||| |||||||
Sbjct: 488 tttgaggtggatataaaacatcttcttgagcagattgttacagctaccta 439