Miyakogusa Predicted Gene

Lj5g3v0308460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308460.1 Non Characterized Hit- tr|I1M8S5|I1M8S5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15837
PE,70.42,0,TAF4,Transcription initiation factor TFIID component TAF4;
RST,RST domain of plant C-terminal; SUBFA,CUFF.52799.1
         (859 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g102840.1 | transcription initiation factor | HC | chr3:47...   357   3e-98
Medtr3g102910.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC ...   315   8e-86
Medtr3g102940.1 | transcription initiation factor | HC | chr3:47...   184   3e-46
Medtr3g102950.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC ...   146   9e-35

>Medtr3g102840.1 | transcription initiation factor | HC |
           chr3:47389115-47387417 | 20130731
          Length = 311

 Score =  357 bits (916), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 209/256 (81%), Gaps = 1/256 (0%)

Query: 594 VEQSIEQLNDVTAVSGVDLREEEEQLFSGQKEDSRVSEASRKAVQEEEERLILQKAPLQK 653
           +E SI+QLNDVTAVSGVDLREEEEQLFSG K+DSRVSEASR+ VQEEEE LIL KAPLQ+
Sbjct: 36  LEPSIDQLNDVTAVSGVDLREEEEQLFSGPKDDSRVSEASRRVVQEEEESLILLKAPLQR 95

Query: 654 KLIDIMAKCGLKGMSNDVERCLSLCVEERMRGLISNLIRLSKQRVDVEKTRHRTIVTSDV 713
           KLI+IM +CGLKGM NDVERCLSLCVEERMRG+ISN+IR+SKQRVD+EKTRHRT+VTSDV
Sbjct: 96  KLIEIMTECGLKGMGNDVERCLSLCVEERMRGVISNIIRMSKQRVDIEKTRHRTVVTSDV 155

Query: 714 GQQILTINRKVREEWEKNLAE-EKLRKLNDVESNAGDDGDAEKDESRSKSTKVNKEEDGK 772
            QQI+T+NRK REEWEK  AE EKLRKLNDVE ++G DGD EKDE R+K+TKVN+E D K
Sbjct: 156 RQQIMTMNRKAREEWEKKQAETEKLRKLNDVEGSSGVDGDKEKDEGRNKATKVNREVDDK 215

Query: 773 LXXXXXXXXXXXXXXXXXMLSKWQLLAEQARQKREEAMDTSSGSQPSNDVNPKSLSTSGR 832
           +                 MLSKWQL+AEQARQKRE   DT+SGSQ + D++ KS  +SGR
Sbjct: 216 MRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGTDTASGSQQTKDISRKSSPSSGR 275

Query: 833 GTKDDQEGERKGSTAF 848
            TKD+QE ERKG T+ 
Sbjct: 276 STKDNQERERKGPTSL 291


>Medtr3g102910.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC |
           chr3:47408580-47407083 | 20130731
          Length = 418

 Score =  315 bits (808), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 185/361 (51%), Positives = 232/361 (64%), Gaps = 46/361 (12%)

Query: 176 MSNQQATVTEQPNNQTNRGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKLKKDEIQKSDF 235
           M NQ+A V EQP++Q NR  QVP GLLLP++IPQLA+DKA++LQTL  KLK+DEI K   
Sbjct: 1   MHNQEAAVNEQPSSQINRNKQVPIGLLLPIIIPQLAEDKAIELQTLMEKLKRDEISKDQC 60

Query: 236 VRVMKNIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVNDPHASAQMHQ 295
           VR++K IV +QM+R AL +VQ Q +SN   +GQQHP+   TV+S     NDPHA  ++H 
Sbjct: 61  VRLLKGIVEDQMIRKALTEVQQQIKSNTGSSGQQHPISMPTVTSIPAQFNDPHAIVKLHP 120

Query: 296 RSM--AADQNRMTSSAVQI--------MERNARKSQELDVKIESQGLQSSQ-LPFSRNAV 344
           RSM  AAD +   SS +Q+        M+ + +KSQE DV    Q ++ +Q LP S N +
Sbjct: 121 RSMNAAADHSHNNSSVIQVKTGPTYSTMDISTKKSQEHDV----QAVEPTQLLPSSSNTI 176

Query: 345 SQETERSSVHIQGLNKQQQQHIHFPSAYGSSNDSYNPFSGASSGSNSFIKPQQQ--DSHM 402
            QETE + VH QG   QQQQHIHFPS Y  S  ++NPF G  +GS S ++PQ Q  +SH 
Sbjct: 177 CQETENTPVHTQGFYNQQQQHIHFPSPYEISGGNFNPFLGKITGSLSSLRPQPQPLNSHK 236

Query: 403 SQIPHQSISSNHLGGTTHMIGIPKLEQQNSLNDSKKL-GGSVCAAVNRAASQQTSNAWQP 461
            +IPHQSI  NHLG          +EQQ+  ND K++ GGSV   VN  ASQQT N+WQ 
Sbjct: 237 RRIPHQSIGLNHLG----------VEQQSLFNDPKRMRGGSVSTVVNNTASQQTLNSWQ- 285

Query: 462 PTNKEQNLGFMSSASYVKKEPGDLSTEQQHRHNLSKLHGLPSVNSAQVEKGG-ANQRTVM 520
                      SSA     EP DLSTEQQH+H+LSKLHGLPSVNS Q E+GG  NQ T+ 
Sbjct: 286 -----------SSA-----EPNDLSTEQQHKHHLSKLHGLPSVNSGQNEQGGDVNQGTIK 329

Query: 521 D 521
           D
Sbjct: 330 D 330


>Medtr3g102940.1 | transcription initiation factor | HC |
           chr3:47419507-47418800 | 20130731
          Length = 208

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 28/220 (12%)

Query: 232 KSDFVRVMKNIVGEQMLRLALVKVQSQTRSNQ-EPAGQQHPVRTQTVSSGVRHVNDPHAS 290
           K  FVR+MK IVG+QMLR+AL KVQ QT++N     GQQ PVR  TV+S     NDP A 
Sbjct: 3   KEHFVRLMKGIVGDQMLRIALAKVQQQTKTNTGSSGGQQPPVRISTVTSSGTKFNDPDAL 62

Query: 291 AQMHQRSM--AADQNRMTSSAVQI--------MERNARKSQELDVKIESQGLQSSQLPFS 340
           AQ+HQRS   AAD +   SSA+Q+        M+ +A+K QE DV++    +QS+QLP S
Sbjct: 63  AQLHQRSWNAAADHSHNASSAIQVKSEPTYSTMDISAKKPQEHDVRV----VQSNQLPTS 118

Query: 341 RN-AVSQETERSSVHIQGLNKQQQQHIHFPSAYGSSNDSYNPFSGASSGSNSFIKPQ--Q 397
            + A+SQETERS++H+QGLNKQQQQHIHFPS YGSS  +Y+ FSG  +GS S ++PQ   
Sbjct: 119 SSIAISQETERSTIHMQGLNKQQQQHIHFPSTYGSSGGNYSHFSGTITGSLSSLRPQLHH 178

Query: 398 QDSHMSQIPHQSISSNHLGGTTHMIGIPKLEQQNSLNDSK 437
            D H+ +IP  +I  NHLG          + +Q++ NDSK
Sbjct: 179 HDLHIRRIPDLNIGLNHLG----------VIRQSTFNDSK 208


>Medtr3g102950.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC |
           chr3:47422396-47421268 | 20130731
          Length = 254

 Score =  146 bits (368), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 120/204 (58%), Gaps = 30/204 (14%)

Query: 227 KDEIQKSDFVRVMKNIVGEQMLRLALVKVQSQ-------------TRSNQEPAGQQHPVR 273
           +DEI K  FVR+MK IVG+ MLR+AL KVQ Q             T++N   +GQQ PVR
Sbjct: 35  RDEIPKEHFVRLMKGIVGDPMLRIALAKVQQQIDFNVMLRTILFLTKTNTGSSGQQPPVR 94

Query: 274 TQTVSSGVRHVNDPHASAQMHQRSM--AADQNRMTSSAVQI--------MERNARKSQEL 323
             TV+S     N P A AQ+HQRS   AAD +   SSA+Q+        M+ +A+KSQE 
Sbjct: 95  MPTVTSSGTKFNGPDALAQLHQRSTNAAADHSHNASSAIQVKSEPSYSTMDISAKKSQEH 154

Query: 324 DVKIESQGLQSSQL-PFSRNAVSQETERSSVHIQGLNKQQQQHIHFPSAYGSSNDSYNPF 382
           DV++    ++ +QL P S N +SQETE + V  QG   QQQQHIHFP  Y  S  ++NPF
Sbjct: 155 DVRV----VEPTQLLPSSSNTISQETENTPVCTQGFYNQQQQHIHFPLPYEISGCNFNPF 210

Query: 383 SGASSGSNSFIKPQQQDSHMSQIP 406
            G  +GS S ++P  QD  M Q P
Sbjct: 211 LGTITGSLSSLRP--QDVEMFQDP 232