Miyakogusa Predicted Gene

Lj5g3v0308460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308460.1 Non Chatacterized Hit- tr|I1M8S5|I1M8S5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15837
PE,70.42,0,TAF4,Transcription initiation factor TFIID component TAF4;
RST,RST domain of plant C-terminal; SUBFA,CUFF.52799.1
         (859 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43130.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4 | c...   452   e-127
AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:173...   452   e-127
AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B | ...   233   4e-61

>AT5G43130.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4 |
           chr5:17315608-17321144 REVERSE LENGTH=823
          Length = 823

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 345/874 (39%), Positives = 455/874 (52%), Gaps = 129/874 (14%)

Query: 1   MDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLSGSDSVLSQENNNTVSQ 60
           MDPSI KLLE+DEDE+MHS  DV+AFQAALNRDI G  +TS       V +  NN++  Q
Sbjct: 1   MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEGSMTTS----IPHVTNPGNNHSSRQ 56

Query: 61  SLPQWPTSSLDSQTDSQNQEP--KSVVQEEQPSEMELKQPVPLVE----QLQHVASQDVN 114
               W     DS  + Q Q     + ++E++ S +E +    L       LQH   QD++
Sbjct: 57  QFSTWKNGIGDSNINVQTQHSLESTQMKEQEGSTLENQHQHDLKRANEPHLQHNQPQDLH 116

Query: 115 NALLSQKQSQDECHQVPTVQVXXXXXXXXXXXXXXKDPVLNNEVVKTHNPSSESQYAKLQ 174
            A     Q  +   QVP                  K+P   NE  ++HN  SESQY KLQ
Sbjct: 117 RA----GQLWENPSQVP---------QSTGLPISEKNPT-GNESDRSHNQESESQYMKLQ 162

Query: 175 QMSNQQATVTEQPNNQTN------RGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKLKKD 228
           +MS+QQA   E P N  N         QVPF  LLP L+ QL KD+A+QL+TL+A+LKK+
Sbjct: 163 KMSSQQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKN 222

Query: 229 EIQKSDFVRVMKNIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVNDPH 288
           EI K  F R MK+IVG+QMLR+A+ K+Q Q   NQ   G Q P                 
Sbjct: 223 EIPKEGFTRHMKDIVGDQMLRMAVSKLQ-QVNYNQGKIGIQAPS---------------- 265

Query: 289 ASAQMHQRSMAADQNRMTSSAVQIMERNARKSQELDVKIESQGLQSSQLPFSRNAVSQET 348
                                    E N +KSQ      + + +  +QLP S +     T
Sbjct: 266 ------------------------TEINNQKSQS-----DPRAVHLNQLPSSASG----T 292

Query: 349 ERSSVHIQGLNKQQQQHI-HFPSAYG--SSNDSYNPFSGASS-GSNSFIKPQQQDSHMSQ 404
             SSV +QGL K  Q  + H PS++   +++ S++ F G ++  S S ++P   DSHM  
Sbjct: 293 LGSSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLRPHLHDSHMRH 352

Query: 405 IPH-QSISSNHLGG----TTHMIGIPKLEQQNSLNDSKKLGGSVCAAVNRAASQQTSNAW 459
           + H Q + S  LGG    TT+M+ +PK E+ +S+ND  ++ G         A+    N+ 
Sbjct: 353 VAHNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQG--------GATSHFQNSS 404

Query: 460 QPPTNKEQNLGFMSSASYVKKEPGDLSTEQQHRHNLSKLHGLPSVNSAQVEKGGANQRTV 519
             P N     G  SS S+VK+E  D S E+ +  +++    L   +S  V          
Sbjct: 405 SLPLNSAPGQG--SSVSHVKQESVDQSFEKNNAASMTSNEDLEKESSRMV---------- 452

Query: 520 MDEFSRGLXXXXXXXXXXXVMTQLDP----NVSTPSNVS--GVIARTXXXXXXXXXXXXX 573
               S              + TQLD     N   P   S  G  AR              
Sbjct: 453 ---LSTPNNMAPASSVSPSMTTQLDASTTMNSRGPLGTSQGGANARMPPKKPSVGQKKPL 509

Query: 574 DVXXXXXXXXXXXXXXXXXXVEQSIEQLNDVTAVSGVDLREEEEQLFSGQKEDSRVSEAS 633
           +                   ++QSIEQLNDVTAVSGV+LREEEEQLFSG KED RVSEAS
Sbjct: 510 ETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFSGAKEDGRVSEAS 569

Query: 634 RKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVERCLSLCVEERMRGLISNLIRL 693
           R+ V EEEERLILQK PLQ+KL +IMAK GLK +SNDVERCLSLCVEERMRGL+S++IRL
Sbjct: 570 RRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLLSHIIRL 629

Query: 694 SKQRVDVEKTRHRTIVTSDVGQQILTINRKVREEWEKNLAE-EKLRKLNDV-ESNAGDDG 751
           SKQRVD EK+RHRT +TSD+  QI  +N+KV+EEWEK  AE EKL+K ++  E + G D 
Sbjct: 630 SKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKPSESEEGDGGVDS 689

Query: 752 DAEKDESRSKSTKVNKEEDGKLXXXXXXXXXXXXXXXXXMLSKWQLLAEQARQKREEAMD 811
           + +K+++RSK  K NKE+D K+                    KWQL+AE ARQK      
Sbjct: 690 EKDKEDNRSKGVKGNKEDDDKMRTTAANVAARAAVGGDDAFLKWQLMAE-ARQK------ 742

Query: 812 TSSGSQPSNDVNPKSLSTSGRGTKDDQEGERKGS 845
             S S+   D N K+ S  G+ +KD Q+G R+ S
Sbjct: 743 --SVSEAGKDGNQKTTSGGGKNSKDRQDGGRRFS 774


>AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 |
           chr5:17315608-17321144 REVERSE LENGTH=852
          Length = 852

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 346/874 (39%), Positives = 453/874 (51%), Gaps = 129/874 (14%)

Query: 1   MDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLSGSDSVLSQENNNTVSQ 60
           MDPSI KLLE+DEDE+MHS  DV+AFQAALNRDI G  +TS       V +  NN++  Q
Sbjct: 1   MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEGSMTTS----IPHVTNPGNNHSSRQ 56

Query: 61  SLPQWPTSSLDSQTDSQNQEPKSVVQ--EEQPSEMELKQPVPLVE----QLQHVASQDVN 114
               W     DS  + Q Q      Q  E++ S +E +    L       LQH   QD++
Sbjct: 57  QFSTWKNGIGDSNINVQTQHSLESTQMKEQEGSTLENQHQHDLKRANEPHLQHNQPQDLH 116

Query: 115 NALLSQKQSQDECHQVPTVQVXXXXXXXXXXXXXXKDPVLNNEVVKTHNPSSESQYAKLQ 174
            A     Q  +   QVP                  K+P   NE  ++HN  SESQY KLQ
Sbjct: 117 RA----GQLWENPSQVP---------QSTGLPISEKNPT-GNESDRSHNQESESQYMKLQ 162

Query: 175 QMSNQQATVTEQPNNQTN------RGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKLKKD 228
           +MS+QQA   E P N  N         QVPF  LLP L+ QL KD+A+QL+TL+A+LKK+
Sbjct: 163 KMSSQQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKN 222

Query: 229 EIQKSDFVRVMKNIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVNDPH 288
           EI K  F R MK+IVG+QMLR+A+ K+Q Q   NQ   G Q P                 
Sbjct: 223 EIPKEGFTRHMKDIVGDQMLRMAVSKLQ-QVNYNQGKIGIQAPS---------------- 265

Query: 289 ASAQMHQRSMAADQNRMTSSAVQIMERNARKSQELDVKIESQGLQSSQLPFSRNAVSQET 348
                                    E N +KSQ      + + +  +QLP S +     T
Sbjct: 266 ------------------------TEINNQKSQS-----DPRAVHLNQLPSSASG----T 292

Query: 349 ERSSVHIQGLNKQQQQHI-HFPSAYG--SSNDSYNPFSGASS-GSNSFIKPQQQDSHMSQ 404
             SSV +QGL K  Q  + H PS++   +++ S++ F G ++  S S ++P   DSHM  
Sbjct: 293 LGSSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLRPHLHDSHMRH 352

Query: 405 IPH-QSISSNHLGG----TTHMIGIPKLEQQNSLNDSKKLGGSVCAAVNRAASQQTSNAW 459
           + H Q + S  LGG    TT+M+ +PK E+ +S+ND  ++ G         A+    N+ 
Sbjct: 353 VAHNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQG--------GATSHFQNSS 404

Query: 460 QPPTNKEQNLGFMSSASYVKKEPGDLSTEQQHRHNLSKLHGLPSVNSAQVEKGGANQRTV 519
             P N     G  SS S+VK+E  D S E+ +  +++    L   +S  V          
Sbjct: 405 SLPLNSAPGQG--SSVSHVKQESVDQSFEKNNAASMTSNEDLEKESSRMV---------- 452

Query: 520 MDEFSRGLXXXXXXXXXXXVMTQLDP----NVSTPSNVS--GVIARTXXXXXXXXXXXXX 573
               S              + TQLD     N   P   S  G  AR              
Sbjct: 453 ---LSTPNNMAPASSVSPSMTTQLDASTTMNSRGPLGTSQGGANARMPPKKPSVGQKKPL 509

Query: 574 DVXXXXXXXXXXXXXXXXXXVEQSIEQLNDVTAVSGVDLREEEEQLFSGQKEDSRVSEAS 633
           +                   ++QSIEQLNDVTAVSGV+LREEEEQLFSG KED RVSEAS
Sbjct: 510 ETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFSGAKEDGRVSEAS 569

Query: 634 RKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVERCLSLCVEERMRGLISNLIRL 693
           R+ V EEEERLILQK PLQ+KL +IMAK GLK +SNDVERCLSLCVEERMRGL+S++IRL
Sbjct: 570 RRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLLSHIIRL 629

Query: 694 SKQRVDVEKTRHRTIVTSDVGQQILTINRKVREEWEKNLAE-EKLRKLNDV-ESNAGDDG 751
           SKQRVD EK+RHRT +TSD+  QI  +N+KV+EEWEK  AE EKL+K ++  E + G D 
Sbjct: 630 SKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKPSESEEGDGGVDS 689

Query: 752 DAEKDESRSKSTKVNKEEDGKLXXXXXXXXXXXXXXXXXMLSKWQLLAEQARQKREEAMD 811
           + +K+++RSK  K NKE+D K+                    KWQL+AE ARQK      
Sbjct: 690 EKDKEDNRSKGVKGNKEDDDKMRTTAANVAARAAVGGDDAFLKWQLMAE-ARQK------ 742

Query: 812 TSSGSQPSNDVNPKSLSTSGRGTKDDQEGERKGS 845
             S S+   D N K+ S  G+ +KD Q+G R+ S
Sbjct: 743 --SVSEAGKDGNQKTTSGGGKNSKDRQDGGRRFS 774


>AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B |
           chr1:9643351-9647376 REVERSE LENGTH=720
          Length = 720

 Score =  233 bits (594), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 321/670 (47%), Gaps = 102/670 (15%)

Query: 169 QYAKLQQMSNQQATVTEQ---PNNQTNRGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKL 225
           +Y KLQ+MS+++    E+   P N   R  +V   LL  V+  Q  K        L  KL
Sbjct: 57  RYMKLQKMSSKETPWVEKTVDPVNHNLRLARV-TDLLRTVVDHQPGK--KTHCLNLHYKL 113

Query: 226 KKDEIQKSDFVRVMKNIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVN 285
           K+ E+   +F+R ++++VG+Q++R  + ++      N    G + P R            
Sbjct: 114 KRKELTMEEFMRQLRDLVGDQIIRSVISQLPQLKPGN---MGIKVPGR------------ 158

Query: 286 DPHASAQMHQRSMAADQNRMTSSAVQIMERNARKSQELDVKIESQGLQSSQLPFSRNAVS 345
                         ++ ++++ SA    E  A++S   +V +       +QL    ++ +
Sbjct: 159 --------------SNHDKVSKSA----EFTAQESDPREVHV-------NQL----SSTT 189

Query: 346 QETERSSVHIQGLNKQQQQHIHFPSA---YGSSNDSYNPFSGA---SSGSNSFIK-PQQQ 398
             T  SS  +QGLNK  +QH+  PS+     + + S NP+ G    S GS+S  K P  Q
Sbjct: 190 SGTLNSSTTVQGLNKHPEQHMQLPSSSFHMDTKSGSLNPYPGTNVTSPGSSSRAKLPDFQ 249

Query: 399 DSHMSQIPHQSISSNHLGG----TTHMIGIPKLEQQNSLNDSKKL-GGSVCAAVNRAASQ 453
             H     +Q++    +GG    T +M  +PK E+   +N   ++  G +      ++  
Sbjct: 250 --HREN--NQNVGIASVGGPTKSTINMTTVPKFERPTFVNGPSRVQDGPISDFPKNSSFP 305

Query: 454 QTSNAWQPPTNKEQNLGFMSSASYVKKEPGDLSTEQQHRHN-----------LSKLHGLP 502
             S  WQ    K+  +G  SS  +V+ +  D S EQ H+             L + + +P
Sbjct: 306 LYSAPWQGSVTKDHTVGPSSSVIHVEHKLIDQSFEQAHKPRYLVQQGVTNVPLKQKNAIP 365

Query: 503 SVNSAQVEKGGANQRTVMDEFSRGLXXXXXXXXXXXVMTQLDP----NVSTPSNVSGVIA 558
             ++  +EK    Q + M  F+              + TQLD     N+  PS     IA
Sbjct: 366 ISSNDDLEK----QSSKMGLFT---STTSASSVFPSMTTQLDSSTMVNMPAPSETIPKIA 418

Query: 559 RTXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXV--EQSIEQLNDVTAVSGVDLREEE 616
                           +                     ++SIE+ NDVTAVSG++LREEE
Sbjct: 419 NVTVTPKMPSVGQKKPLEALGSSLPPSRKKQKICGTSSDESIEKFNDVTAVSGINLREEE 478

Query: 617 EQLF-SGQKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVERCL 675
           +QL  SG K++ RVS+A R+ V  EEER +LQK PLQ+KL +IM K GLK + +DVERCL
Sbjct: 479 KQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLTEIMGKSGLKHIDHDVERCL 538

Query: 676 SLCVEERMRGLISNLIRLSKQRVDVEKTRHRTIVTSDVGQQILTINRKVREEWEKNLAEE 735
           SLCVEERMRGL+ N+IR+SKQR D EK R+RT +TSD+ ++I  +N+KV+EEWEK  + E
Sbjct: 539 SLCVEERMRGLLFNIIRISKQRTDAEKCRNRTFITSDIRKEINEMNQKVKEEWEKKHSGE 598

Query: 736 KLRKLNDVESNAGDDGDAEKDESRSKSTKVNKEEDGKLXXXXXXXXXXXXXXXXXMLSKW 795
           +  K N          D EK++ RS   K NK+++ K                    SKW
Sbjct: 599 EKNKEN----------DTEKEDQRSNEVKANKKDEDKERAKAANVAVRAAVGGDDRFSKW 648

Query: 796 QLLAEQARQK 805
           +L+AE ARQ+
Sbjct: 649 KLMAE-ARQR 657