Miyakogusa Predicted Gene
- Lj5g3v0308460.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0308460.1 Non Chatacterized Hit- tr|I1M8S5|I1M8S5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15837
PE,70.42,0,TAF4,Transcription initiation factor TFIID component TAF4;
RST,RST domain of plant C-terminal; SUBFA,CUFF.52799.1
(2577 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72837 similar to UniRef100_A7NU74 Cluster: Chromosome... 884 0.0
gnl|LJGI|TC71160 similar to UniRef100_A7NU73 Cluster: Chromosome... 476 e-133
gnl|LJGI|TC74548 weakly similar to UniRef100_A7NU73 Cluster: Chr... 301 1e-80
gnl|LJGI|TC75391 similar to UniRef100_A7NU74 Cluster: Chromosome... 101 2e-20
>gnl|LJGI|TC72837 similar to UniRef100_A7NU74 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 726
Score = 884 bits (446), Expect = 0.0
Identities = 455/458 (99%)
Strand = Plus / Minus
Query: 1 atggacccatctatagtgaaacttcttgaagatgacgaggatgaaacaatgcattcgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atggacccatctatagtgaaacttcttgaagatgacgaggatgaaacaatgcattcgcgg 399
Query: 61 gtggatgtggaagctttccaggctgctctaaatagagatattggaggagatgcatctact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtggatgtggaagctttccaggctgctctaaatagagatattggaggagatgcatctact 339
Query: 121 tctcagctttctggttcagattcagttttgtctcaagaaaacaataatacagttagtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctcagctttctggttcagattcagttttgtctcaagaaaacaataatacagttagtcag 279
Query: 181 tcattaccccagtggccaacttctagccttgacagccaaactgacagtcaaaatcaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcattaccccagtggccaacttctagccttgacagccaaactgacagtcaaaatcaagag 219
Query: 241 cctaaatctgtagtgcaggaagagcaaccttctgagatggaactgaagcaacctgtacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cctaaatctgtagtgcaggaagagcaaccttctgagatggaactgaagcaacctgtacct 159
Query: 301 cttgtggaacaactgcagcatgttgcttcacaggatgtaaataatgctctgttgtcacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cttgtggaacaactgcagcatgttgcttcacaggatgtaaataatgctctgttgtcacag 99
Query: 361 aaacaatctcaagatgaatgtcaccaagtgccgactgtacaagtttccctccaaaattct 420
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 98 aaacaatctcaagatgaatgtcaccaagtgccgactgtacaagtttcccctccaaattct 39
Query: 421 caagcaagtggaagtcagaattctggaaaagatccagt 458
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 caagcaagtggaagtcagaattctggaaaagatccagt 1
>gnl|LJGI|TC71160 similar to UniRef100_A7NU73 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 1597
Score = 476 bits (240), Expect = e-133
Identities = 553/659 (83%), Gaps = 3/659 (0%)
Strand = Plus / Plus
Query: 1767 gtctgggggatctgtagaacaaagcattgaacagcttaatgacgtgactgctgtcagtgg 1826
|||||| |||||| | || ||||||||||||||||||||||| || || ||||| ||||
Sbjct: 462 gtctggtggatctttggaccaaagcattgaacagcttaatgatgttacagctgttggtgg 521
Query: 1827 agttgatcttagggaagaggaagagcagctattttctgggcagaaagaggatagtcgagt 1886
|||||||| ||||| |||||||| ||| |||||||||||| | ||||||||||||||
Sbjct: 522 ggttgatctgagggaggaggaagaacagttattttctgggcccagggaggatagtcgagt 581
Query: 1887 ttcagaagcatctcgaaaagctgtgcaagaagaggaggaaaggctgattttgcagaaagc 1946
||||||||||||||||| || |||||||||||| |||||||| ||||||||||| |||||
Sbjct: 582 ttcagaagcatctcgaagagttgtgcaagaagaagaggaaagtctgattttgcaaaaagc 641
Query: 1947 tccattgcaaaagaagttgattgacattatggccaagtgtggcttgaagggtatgagcaa 2006
||| ||||| || || |||| | | |||||||| |||||||||||||||| ||||| ||
Sbjct: 642 tccgttgcagaaaaaattgactaagattatggctgagtgtggcttgaagggaatgagtaa 701
Query: 2007 tgatgtggagagatgcttgtcactgtgtgtagaggaaagaatgcgtggactcataagtaa 2066
||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct: 702 tgatgtggagaaatgcttgtcactgtgtgtggaggaaagaatgcgtggattaataagtaa 761
Query: 2067 cctgattagactgtcaaaacagcgggttgatgttgagaagacaagacatcggacaattgt 2126
| |||||||| ||||||||||||||||||| |||| |||| ||||| ||||| ||||
Sbjct: 762 catgattagaatgtcaaaacagcgggttgaccttgaaaagatgagacaccggactgttgt 821
Query: 2127 cacctcagatgttgggcagcaaatactgacaataaataggaaagtaagggaagagtggga 2186
||| || |||||| | |||||||| || |||| |||| |||| |||||||||||||||
Sbjct: 822 cacttctgatgttcgccagcaaatcatggcaatgaatacaaaagcaagggaagagtggga 881
Query: 2187 gaaaaatctggcaga---agagaagcttcggaaactaaatgatgttgagagcaatgctgg 2243
|||||| | |||||| ||||||||| |||||| ||| ||||||||| | || | ||
Sbjct: 882 gaaaaaacaggcagaaacagagaagctccggaaagtaactgatgttgaaggtcattccgg 941
Query: 2244 agatgatggtgatgcggagaaggatgagagtcgttctaaatcgacaaaggtgaacaagga 2303
|| ||||||||| ||||||||||||| |||| ||||| | |||||||||||||||
Sbjct: 942 agttgatggtgacagggagaaggatgagggtcgcaacaaatcaataaaggtgaacaagga 1001
Query: 2304 agaggatggcaagctgaggacgaatgctgcaaatgttgctgcccgcgctgctgttnnnnn 2363
| ||||| ||| ||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 1002 ggtggatgacaaaatgaggacaaatgcggcaaatgttgctgcccgagctgctgttggggg 1061
Query: 2364 nnatgatatgctctcaaagtggcaacttctggctgagcaagccaggcagaaacgtgaag 2422
||||| |||| || |||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct: 1062 agatgatgtgctgtcgaagtggcaacatatggctgagctagccaagcagaaacgtgaag 1120
Score = 67.9 bits (34), Expect = 3e-10
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 1415 tgtcgtctgcttcttatgtcaaaaaggagccaggtgacttgtctacagagcagcaacata 1474
|||| |||||||| |||||||||| ||| || |||| | ||||| ||||||||| |||
Sbjct: 83 tgtcatctgcttcatatgtcaaaagggaacctaatgacctctctactgagcagcaatata 142
Query: 1475 ggcataatttgtctaaattgcatggactgccttctgttaattctgc 1520
|||| |||||||||||||||| || | |||||||| ||||||||
Sbjct: 143 ggcaccatttgtctaaattgcacgggtttccttctgtaaattctgc 188
>gnl|LJGI|TC74548 weakly similar to UniRef100_A7NU73 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 573
Score = 301 bits (152), Expect = 1e-80
Identities = 164/168 (97%)
Strand = Plus / Plus
Query: 2410 cagaaacgtgaagaggcgatggacacgtcatccggttcgcagccatcaaatgatgtgaac 2469
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cagaaacgtgaagaggcgatggacacgtcatccggttcgcagccatccaatgatgtgaac 60
Query: 2470 ccgaaatccttatcaacatctggaagaggtacaaaggatgaccaagaaggggagagaaaa 2529
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 61 ccgaaatccttatccacatctggaagaggtaccaaggatgacccagaaggggagagaaaa 120
Query: 2530 ggttctactgcttttcttgcagcttcaggttctgctggaaaacatggg 2577
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttctactgcttttcttgcagcttcaggttctgctggaaaacatggg 168
>gnl|LJGI|TC75391 similar to UniRef100_A7NU74 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 580
Score = 101 bits (51), Expect = 2e-20
Identities = 215/272 (79%), Gaps = 12/272 (4%)
Strand = Plus / Plus
Query: 1 atggacccatctatagtgaaacttcttgaagatgacgaggatgaaacaatgcattcgcgg 60
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct: 137 atggacccatctatagtgaagcttcttgaagatgatgaggatgaaaccatgcattcagga 196
Query: 61 gtggatgtggaagctttccaggctgctctaaatagagatattggaggagatgcatctact 120
| ||||| ||||| || || ||||| |||||||||| || |||||||| || ||| ||
Sbjct: 197 gcagatgtcgaagcatttcaagctgcattaaatagagacataggaggagacgcttcttct 256
Query: 121 tctcagctttctggttcagattcagttttgtctcaagaaaacaataatacagttagtcag 180
|| ||||| |||| ||| ||| | || || |||||| || | ||||||
Sbjct: 257 tcacagctgtctgattcggatgc------------aggaagcaataactcattcagtcag 304
Query: 181 tcattaccccagtggccaacttctagccttgacagccaaactgacagtcaaaatcaagag 240
|||||||| || |||||||||||||| ||||| ||| |||||| |||||||||||||
Sbjct: 305 tcattaccaaagctgccaacttctagccatgacaaccagactgactgtcaaaatcaagat 364
Query: 241 cctaaatctgtagtgcaggaagagcaaccttc 272
|||||| || | |||| |||||||||||||
Sbjct: 365 cctaaaattgcaaagcagcaagagcaaccttc 396