Miyakogusa Predicted Gene

Lj5g3v0255530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0255530.1 tr|G7JAE0|G7JAE0_MEDTR Ribonuclease P protein
subunit p25 OS=Medicago truncatula GN=MTR_3g095260
PE=,44.44,0.0000000002,RIBONUCLEASE P 25KDA SUBUNIT-RELATED,NULL;
AlbA-like,NULL; Alba,DNA/RNA-binding protein Alba-like; A,CUFF.52675.1
         (222 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095240.1 | DNA-binding protein alba protein | HC | chr3:4...   182   2e-46
Medtr3g095260.1 | Rpp20 subunit of nuclear RNase MRP and P prote...   181   5e-46
Medtr3g095250.1 | DNA-binding protein alba protein | HC | chr3:4...   179   3e-45
Medtr7g059030.1 | DNA-binding protein alba protein | HC | chr7:2...   124   8e-29

>Medtr3g095240.1 | DNA-binding protein alba protein | HC |
           chr3:43522165-43525256 | 20130731
          Length = 245

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 95/119 (79%)

Query: 1   MRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDT 60
           MRNYITYA TL QEKG+ EIV KAMGRAINKTVTI ELIKRRIVGLHQNT IGSTDITDT
Sbjct: 29  MRNYITYATTLFQEKGTEEIVLKAMGRAINKTVTITELIKRRIVGLHQNTIIGSTDITDT 88

Query: 61  WXXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEGESSP 119
           W           TTRHVSMITITLSK ELDT+S GYQPPLPADQVK   +++ EGE SP
Sbjct: 89  WEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSP 147


>Medtr3g095260.1 | Rpp20 subunit of nuclear RNase MRP and P protein
           | HC | chr3:43535201-43539919 | 20130731
          Length = 245

 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 95/119 (79%)

Query: 1   MRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDT 60
           MRNYITYA TL QEKGS+EIV KAMGRAINKTV I ELIKRRIVGLHQNT IGSTDITDT
Sbjct: 29  MRNYITYATTLFQEKGSDEIVVKAMGRAINKTVMITELIKRRIVGLHQNTQIGSTDITDT 88

Query: 61  WXXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEGESSP 119
           W           TTRHVSMITITLSK ELDT+S GYQPPLPADQVK   +++ EGE SP
Sbjct: 89  WEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEDEGEGSP 147


>Medtr3g095250.1 | DNA-binding protein alba protein | HC |
           chr3:43527636-43531134 | 20130731
          Length = 239

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 95/119 (79%)

Query: 1   MRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDT 60
           MRNYITYA TL QEKG+++IV KAMGRAINKTV I ELIKRRIVGLHQNT +GSTDITDT
Sbjct: 29  MRNYITYATTLFQEKGADDIVLKAMGRAINKTVMITELIKRRIVGLHQNTQVGSTDITDT 88

Query: 61  WXXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEGESSP 119
           W           TTRHVSMITITLSK ELDT+S GYQPPLPADQVK   +++ EGE SP
Sbjct: 89  WEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSP 147


>Medtr7g059030.1 | DNA-binding protein alba protein | HC |
           chr7:21304062-21298736 | 20130731
          Length = 364

 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 77/111 (69%)

Query: 1   MRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDT 60
           +RNYITYA +LLQEK + EIV KAMG+AI+KTV I E++K+RI  LHQ+TAI S  ITD 
Sbjct: 29  IRNYITYATSLLQEKQAKEIVLKAMGQAISKTVAIAEILKKRISPLHQDTAISSVSITDV 88

Query: 61  WXXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDF 111
           W            TRHVSMI+ITLS  EL+T S GYQ P  A+Q K  +++
Sbjct: 89  WEPIEEGLVPVEMTRHVSMISITLSTGELNTNSPGYQAPSTAEQSKPHSNY 139