Miyakogusa Predicted Gene

Lj5g3v0255530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0255530.1 tr|G7JAE0|G7JAE0_MEDTR Ribonuclease P protein
subunit p25 OS=Medicago truncatula GN=MTR_3g095260
PE=,44.44,0.0000000002,RIBONUCLEASE P 25KDA SUBUNIT-RELATED,NULL;
AlbA-like,NULL; Alba,DNA/RNA-binding protein Alba-like; A,CUFF.52675.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76010.1 | Symbols:  | Alba DNA/RNA-binding protein | chr1:28...   172   2e-43
AT1G20220.1 | Symbols:  | Alba DNA/RNA-binding protein | chr1:70...   164   4e-41
AT3G07030.1 | Symbols:  | Alba DNA/RNA-binding protein | chr3:22...   114   7e-26

>AT1G76010.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr1:28528505-28530488 REVERSE LENGTH=350
          Length = 350

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 105/154 (68%), Gaps = 5/154 (3%)

Query: 2   RNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDTW 61
           RNYITYAMTLLQ+KGS E+VFKAMGRAINKTVTIVELIKRRI  LHQNT+IGSTDITDTW
Sbjct: 30  RNYITYAMTLLQDKGSTEVVFKAMGRAINKTVTIVELIKRRIPDLHQNTSIGSTDITDTW 89

Query: 62  XXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEG-ESSP- 119
                      TTRHVSMITITLSK EL+T+SVGYQ P+P + VK   D DYEG E SP 
Sbjct: 90  EPTEEGLLPLETTRHVSMITITLSKIELNTSSVGYQCPIPIELVKPMGDIDYEGREGSPG 149

Query: 120 ---XXXXXXXXXXXXXXXXXXXFIAADYEDGGWD 150
                                 ++  ++EDGGW+
Sbjct: 150 GRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWE 183


>AT1G20220.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr1:7005090-7007285 REVERSE LENGTH=315
          Length = 315

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 91/115 (79%)

Query: 2   RNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDTW 61
           RNYITYAM LLQE  SNE++FKAMGRAINK+VTIVELIKRRI GLHQ T+IGSTDITDTW
Sbjct: 30  RNYITYAMALLQENKSNEVIFKAMGRAINKSVTIVELIKRRIPGLHQITSIGSTDITDTW 89

Query: 62  XXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVKAATDFDYEGE 116
                      TTRHVSMITITLSK +L+T+SVGYQ P+P + VK   + DYEG+
Sbjct: 90  EPTEEGLQTIETTRHVSMITITLSKEQLNTSSVGYQCPIPIEMVKPLAEIDYEGQ 144


>AT3G07030.1 | Symbols:  | Alba DNA/RNA-binding protein |
           chr3:2223001-2225254 REVERSE LENGTH=405
          Length = 405

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 72/106 (67%)

Query: 1   MRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDT 60
           +RNYI+YA +LLQEK   +IV KAMG+AI+KTV I E++K +I GLHQ+ AI S  ITD 
Sbjct: 29  IRNYISYATSLLQEKSVKDIVLKAMGQAISKTVAISEILKNKIPGLHQDIAISSISITDV 88

Query: 61  WXXXXXXXXXXXTTRHVSMITITLSKNELDTASVGYQPPLPADQVK 106
           W            TRHVSMI+ITLS +EL+  S GYQ P  +DQ K
Sbjct: 89  WEPTEEGLFPVELTRHVSMISITLSLSELNKDSPGYQAPAQSDQSK 134