Miyakogusa Predicted Gene
- Lj5g3v0087430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0087430.1 Non Chatacterized Hit- tr|A3BQA8|A3BQA8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.46,3e-18,PRE-MRNA CLEAVAGE COMPLEX II,NULL; seg,NULL;
ZINC_FINGER_C2H2_1,Zinc finger,
C2H2,NODE_39939_length_2664_cov_53.167793.path2.1
(683 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma10g07660.1 584 e-166
Glyma19g37610.1 526 e-149
Glyma19g37600.1 473 e-133
Glyma03g34910.1 342 6e-94
Glyma10g39710.1 124 3e-28
Glyma20g28050.1 123 6e-28
>Glyma10g07660.1
Length = 898
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 351/729 (48%), Positives = 414/729 (56%), Gaps = 143/729 (19%)
Query: 1 MGTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEA--SMILDARN 58
+G R GGRV E G DKS Y+K+ VAGT+SGQ NGL +K +FLNTEA SMILD +
Sbjct: 239 LGIRRPGGRVTESGHDKSWYSKSGV--VAGTMSGQGNGLGLKYSFLNTEAPKSMILDVHH 296
Query: 59 QPRQNINSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLE 118
QP QNI+S + V+S SWK+SEEEE+ WDEMN+GLT H A++V +NLSK+SWT+DDENL
Sbjct: 297 QPTQNISSTRTSVISASWKNSEEEEYTWDEMNSGLTVHGASTV-SNLSKNSWTADDENL- 354
Query: 119 VEDNHHQSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGH 178
S FG ++ I + + + L + + + +L +
Sbjct: 355 ------VSLVEFG-----DLGIRLMQNRTGTILKTKIYTLLIYYVYIFLTCRKL-KIASK 402
Query: 179 SDGFVSTLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGDESPSRESSLRQQS 238
S+ + +N NS+A RM N+ L ATIGL G GQ HS+G E+PS +S L+Q+S
Sbjct: 403 SEILFGLMLIEKSNANSSAARMVNQPFLSNATIGLPGIAGQFHSLGAENPSGQSPLQQRS 462
Query: 239 PPP------------------------------------------------VGKFHRSQL 250
P P VG SQL
Sbjct: 463 PSPPVSVHPSHPLQNLAEQDLPQNHKASQFLGGLQSQYIKDSSPAPPPSIQVGNLQSSQL 522
Query: 251 RDLQSGSFSSMTFQPSHKQQLGSSHTEVTAKTEKPHLSKVPLPRETEQPTTTRFETAAGK 310
++LQ G FSS TFQ H+ QLGSSH EVT KTEKP +S+VPL RE
Sbjct: 523 KNLQ-GPFSSTTFQARHQHQLGSSHNEVTVKTEKPPMSEVPLARE--------------- 566
Query: 311 GGKLSNMPITNRLPTSRSLDTGKLPSILGDRPSQSSGSSPAGLXXXXXXXXXXXXLGRPK 370
T +LDTG LPS
Sbjct: 567 --------------TKSNLDTGNLPS---------------------------------- 578
Query: 371 DNSSALPKIPPRRAAQPPRTSALPPASSNXXXXXXXXXXXXXXXXXXXXXXXXXXVAKGL 430
R A PPR S LPPASSN VAKGL
Sbjct: 579 ------------RKAGPPRASTLPPASSNVSSASAQTSSDTNNTLNPIANLLSSLVAKGL 626
Query: 431 ISAETETTAKVPSEMLTRLEDQSDSITTXXXXXXXXXXXXXXXXX-XTKDEVDDGAKTPI 489
ISAETE+ AKVPSE+LTRLE+QSDSITT TKDEVDD A+TPI
Sbjct: 627 ISAETESPAKVPSELLTRLEEQSDSITTTSSLPVASVSGSATVPVPSTKDEVDDTARTPI 686
Query: 490 SLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLE 549
SLSESTS IRN IG EFKPDVIRE H SV+SGLFD+FPH CSIC KL+FQEQF+RHL+
Sbjct: 687 SLSESTSPGIRNLIGLEFKPDVIREFHSSVVSGLFDNFPHQCSICGHKLRFQEQFNRHLK 746
Query: 550 WHATREREHSGLIKASRWYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLA 609
WHATRE E +GLI ASRWYLKS+DW++GK E SENEF DSVD YGKE D++QEDAMVLA
Sbjct: 747 WHATRESEENGLISASRWYLKSNDWILGKAEYPSENEFTDSVDTYGKEADKSQEDAMVLA 806
Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
DE QCLCVLCGELFE+FYCQE GEWMFKGAVY+ NSD +MGIRD STG GPIIHA CL
Sbjct: 807 DEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRGPIIHASCL 866
Query: 670 SENPVSSVL 678
S+N VSSVL
Sbjct: 867 SDNSVSSVL 875
>Glyma19g37610.1
Length = 975
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 329/683 (48%), Positives = 406/683 (59%), Gaps = 42/683 (6%)
Query: 2 GTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMI--LDARNQ 59
G GRTG ++ +LG DK+ + G T SGQRNG ++K ++ N EA + LDA Q
Sbjct: 318 GAGRTGSKLIDLGHDKTWFK--TDGGDPDTTSGQRNGFNLKRSYSNREAPKLTNLDAHRQ 375
Query: 60 PRQNINSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEV 119
PRQ+ ++ +MS +WK SEEEEFMW EMN GLT H A+V +NLS D+W +DDENLE
Sbjct: 376 PRQSTTDIRNNLMSGNWKTSEEEEFMWGEMNIGLTDH-GANVSSNLSTDTWMADDENLEG 434
Query: 120 EDNHHQSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHS 179
ED H Q PFGA VD E+S T +KQ P F HP SW+LQ+ HSID+LN KPG+S
Sbjct: 435 ED-HLQITRPFGAKVDREIS-----TAKKQPPGFGGHPPSSWQLQKHHSIDKLNLKPGYS 488
Query: 180 DGFVSTLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQS 238
+GFVSTL LP N +S A + GN+S A +G+A +GQ G+ ESPS +S LRQQS
Sbjct: 489 EGFVSTLSGLPANPSSLAVKKGNQSFTSNAVVGMAKFVGQQFDSGETESPSGQSPLRQQS 548
Query: 239 PPPVGKFHRSQLRDLQSGSFSSMT-FQPSHKQ-QLGSSHTEVTAKTEKPHLSKVPLPRET 296
P G RD+ G SSMT F+P +Q QL S TEVTAKT+ P SKV L RET
Sbjct: 549 PSLPGA-----ERDMH-GPLSSMTSFRPKLQQKQLNPSQTEVTAKTKLPQ-SKVSLTRET 601
Query: 297 -EQPTTTRFETAAGKGGKLSNMPITNRLPTSRSLDTGKLPSILGDRPSQSSGSSPAGLXX 355
EQ +T K G + I S +LD+ + PS G +P+QS P L
Sbjct: 602 SEQLSTNNLSAVPVKSGIIPKKSI------SSNLDSREDPSQTGVQPTQSG--RPTTLIS 653
Query: 356 XXXXXXXXXXLGRPKDNSSALPKIPPRRAAQPP-RTSALPPASSNXXXXXXXXXXXXXXX 414
L ++SS LPK P +A QPP R S PPASS+
Sbjct: 654 SGSAVASPSSLDPLHNDSSTLPKKPQGKAGQPPQRLSTQPPASSSVSSSSAPTLNAAKNN 713
Query: 415 XXX-XXXXXXXXVAKGLISAETETTAKVPSEMLTRLEDQSDSITTXXXXXXXXXXXXXXX 473
VAKGLISAETE+ VPSE +DQ++ ITT
Sbjct: 714 KLNPIANLLSSLVAKGLISAETESPTTVPSEAPKGSKDQTEIITTSCSLPVTSISGSAAI 773
Query: 474 XXXTK-DEVDDGAKTPISLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCS 532
+ D+VD K + +STSTEIRN IGF+F+P+VIRE HPSVI L+DDFPH+C
Sbjct: 774 PVSSSGDKVDAATKISHASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDFPHNCK 833
Query: 533 ICSLKLKFQEQFDRHLEWHATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSV 591
+C +KLK QE F+RHLEWHA RE G IKASR WY KS DW+ G+ E SE+EF DSV
Sbjct: 834 VCGIKLK-QELFNRHLEWHAAREH---GPIKASRSWYAKSIDWIAGRTEYSSESEFTDSV 889
Query: 592 DRYGKETDRNQEDAMVLADENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDM 651
D K+ D +Q D MVLADENQCLCVLCGELFE+ C + EWMFKGAVY+ SD+N +M
Sbjct: 890 DLQDKKIDSSQLDTMVLADENQCLCVLCGELFEDVCCHDRNEWMFKGAVYMNFSDVNCEM 949
Query: 652 GIRDASTGGGPIIHARCLSENPV 674
R+ GPIIHA+CLSEN V
Sbjct: 950 ESRNV----GPIIHAKCLSENSV 968
>Glyma19g37600.1
Length = 831
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 318/740 (42%), Positives = 396/740 (53%), Gaps = 126/740 (17%)
Query: 2 GTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEA--SMILDARNQ 59
G GRTG ++ +LG D++ + G A T SGQRNG ++K++F N EA SM LDA Q
Sbjct: 150 GAGRTGSKLIDLGHDRTWFK--TDGGDADTTSGQRNGFNLKHSFSNHEAPKSMNLDAHCQ 207
Query: 60 PRQNINSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEV 119
PRQ+I + Q VMS +WK SEEEEFMWDE++ GL H +V LS D+W +D ENLE
Sbjct: 208 PRQSITNKQNDVMSCNWKTSEEEEFMWDEIDNGLIDH-GPNVSKTLSTDTWMADVENLEG 266
Query: 120 EDNHHQSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHS 179
ED H Q PFGA V+ E+S T + QLP HP SW+LQ N KPG+S
Sbjct: 267 ED-HLQITRPFGAKVNREIS-----TVKNQLPGLGGHPPSSWQLQ--------NLKPGYS 312
Query: 180 DGFVSTLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQS 238
+GFVS+ ALP N +S + GN+S + + +G +GQ G+ ESPS +S LRQQS
Sbjct: 313 EGFVSSHSALPANASSLTVKKGNQSFMSNSVVGRVKFVGQQFDSGETESPSWQSPLRQQS 372
Query: 239 PP------------------------------------------------PVGKFHRSQL 250
P VG RSQ
Sbjct: 373 PSLPGTVHHPHSMQNFADQELPQNLKTSQFLGGPITQHIRDHSLTLRPIVQVGNLRRSQE 432
Query: 251 RDLQSGSFSSMT-FQPSHKQQLGSSHTEVTAKTEKPHLSKVPLPRETE-QPTTTRFETAA 308
+D+Q G SSMT F+P +Q K P SKV L RET Q TT A
Sbjct: 433 KDMQ-GPLSSMTSFRPKLQQ-----------KQLDPSQSKVSLTRETSAQLTTNNLSAAP 480
Query: 309 GKGGKLSNMPITNRLPTSRSLDTGKLPSILGDRPSQSSGSSPAGLXXXXXXXXXXXXLGR 368
K G + IT D K PS G +P+QS GR
Sbjct: 481 VKSGVIPKKSITC------DPDPRKHPSQTGVQPTQS---------------------GR 513
Query: 369 P------KDNSSALPKIPPRRAAQPP-RTSALPPASSNXXXXXX-XXXXXXXXXXXXXXX 420
P ++SS LPK +A QPP R S PPASSN
Sbjct: 514 PTTLDPLHNDSSTLPKNTQGKAGQPPQRLSTQPPASSNISSSSAPTLNTAKNNKLNPISN 573
Query: 421 XXXXXVAKGLISAETETTAKVPSEMLTRLEDQSDSITTXXXXXXXXXXXXXXXXXXTK-D 479
VAKGLISAETE+ VPSE+ +DQ++ ITT + D
Sbjct: 574 LLSSLVAKGLISAETESPTMVPSEVPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSGD 633
Query: 480 EVDDGAKTPISLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLK 539
EVD KT ++ +STSTEIRN +GF+F+P+VIRE HPSVI L+DDFPH+C +C +KLK
Sbjct: 634 EVDSATKTSLASPQSTSTEIRNLVGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLK 693
Query: 540 FQEQFDRHLEWHATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKET 598
+E F+RHLEWHATRE G IKASR WY +SSDW+ GK E SE+ F DSVD + ++T
Sbjct: 694 QEELFNRHLEWHATREH---GPIKASRSWYAESSDWIAGKAEYSSESGFNDSVDVHEQKT 750
Query: 599 DRNQEDAMVLADENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDAST 658
D +Q D MVLADENQCLCVLCGELFE+ YC E EWMFKGAVY+ SD+N +M R+
Sbjct: 751 DSSQLDTMVLADENQCLCVLCGELFEDAYCHERNEWMFKGAVYMNYSDVNCEMESRNV-- 808
Query: 659 GGGPIIHARCLSENPVSSVL 678
GPIIHA+CLSEN + + L
Sbjct: 809 --GPIIHAKCLSENSIVTNL 826
>Glyma03g34910.1
Length = 754
Score = 342 bits (878), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 234/563 (41%), Positives = 301/563 (53%), Gaps = 81/563 (14%)
Query: 138 MSIESQATERKQLPAFRPHP-SLSWKL-QEQHSIDELNQKPGHSDGFVSTLGALPTNTNS 195
M++++ R+ + R + S +WK +E+ + DE+N G LPTN +S
Sbjct: 256 MNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGSG-----------LPTNASS 304
Query: 196 AATRMGNRSLLPKATIGLAGNLGQLHSVG--------DESPSRESSLRQQSPPPVGKFHR 247
A + GN+S + A +G+ +GQ G D SP+ ++ VG R
Sbjct: 305 LAVKKGNQSFMSNAVVGMTKFVGQQFDSGQIISQHIRDHSPTLRPIVK------VGNLRR 358
Query: 248 SQLRDLQSGSFSSMT-FQPSHKQ-QLGSSHTEVTAKTEKPHLSKVPLPRET-EQPTTTRF 304
SQ +D+Q G SSMT +P +Q QL S TEVTA T+ P SKV L RET EQ TT
Sbjct: 359 SQEKDMQ-GPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQ-SKVSLTRETSEQLTTNNL 416
Query: 305 ETAAGKGGKLSNMPITNRLPTSRSLDTGKLPSILGDRPSQSSGSSPAGLXXXXXXXXXXX 364
A K G + IT +S+ +SP+ L
Sbjct: 417 SAAPVKTGIIPKKSIT-----------------------RSAVASPSSLDPL-------- 445
Query: 365 XLGRPKDNSSALPKIPPRRAAQPP-RTSALPPASSNXXXXXXXXXXXXXXXXXX-XXXXX 422
++SS LPK P +A QPP R S PPASSN
Sbjct: 446 -----HNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLL 500
Query: 423 XXXVAKGLISAETETTAKVPSEMLTRLEDQSDSITTXXXXXXXXXXXXXXX-XXXTKDEV 481
VAKGLISAETE+ VPS +DQ++ ITT + DEV
Sbjct: 501 STLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSDDEV 560
Query: 482 DDGAKTPISLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQ 541
D KT ++ +STSTEIRN IGF+F+P+VIRE HPSVI L+DD PHHC +C +KLK +
Sbjct: 561 DAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQE 620
Query: 542 EQFDRHLEWHATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDR 600
E F+RHLEWHATRE G IKASR WY KSSDW+ GK E SE+EF DSVD + ++T
Sbjct: 621 ELFNRHLEWHATREH---GPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGS 677
Query: 601 NQEDAMVLADENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGG 660
+Q D MVLADENQCLCVLCGELFE+ YC E EWMFKG +Y+ SD+N +M S
Sbjct: 678 SQLDTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEM----ESGNV 733
Query: 661 GPIIHARCLSENPVSSVLNMEQD 683
GPIIHA+CLSEN + + N++ D
Sbjct: 734 GPIIHAKCLSENSI--ITNLDND 754
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 2 GTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEA--SMILDARNQ 59
G GRTG ++ +LG DK+ + G A T SGQRNG +K +F N EA SM LDA Q
Sbjct: 206 GAGRTGSKLIDLGHDKTWFK--TDGGDADTTSGQRNGFGLKRSFSNQEAPKSMNLDAHRQ 263
Query: 60 PRQNINSLQRGVMSNSWKHSEEEEFMWDEMNAG 92
PRQ+I +L+ VMS +WK S EEEF DEMN G
Sbjct: 264 PRQSITNLRNNVMSGNWKTS-EEEFTRDEMNNG 295
>Glyma10g39710.1
Length = 837
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 98/178 (55%), Gaps = 18/178 (10%)
Query: 503 IGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATRER-EHSGL 561
+G EF PD+++ H S ++ L+ D P C+ C+L+ K QE+ H++WH T+ R S
Sbjct: 643 VGTEFNPDILKIRHESAVNALYGDLPRQCTTCALRFKCQEEHSSHMDWHVTKNRMSKSRK 702
Query: 562 IKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLADENQCLCVLCG 620
K SR W++ W+ G E+L + E ++ E+ V A+E+Q C LCG
Sbjct: 703 QKPSRKWFVSDRMWLSG-AEALGTESAPGFLPTETIEEMKDHEELAVPAEEDQNTCALCG 761
Query: 621 ELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGG------GPIIHARCLSEN 672
E F+EFY E EWM++GAVY +N +GI T G GPIIHA+C SE+
Sbjct: 762 EPFDEFYSDEMEEWMYRGAVY-----LNAPLGI----TAGMDRSQLGPIIHAKCRSES 810
>Glyma20g28050.1
Length = 837
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 503 IGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATRER-EHSGL 561
+G EF PD+++ H S ++ L+ D P C+ C L+ K QE+ H++WH T+ R +
Sbjct: 643 VGTEFNPDILKVRHESAVNALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKTRK 702
Query: 562 IKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLADENQCLCVLCG 620
K SR W++ W+ G E+L + E ++ E+ V A+E+Q C LCG
Sbjct: 703 QKPSRKWFVSDRMWLSG-AEALGTESAPGFLPTETIEERKDDEELAVPAEEDQNTCALCG 761
Query: 621 ELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCLSEN 672
E F+EFY E EWM++GAVY+ N+ G+ T GPIIHA+C SE+
Sbjct: 762 EPFDEFYSDEMEEWMYRGAVYL-NAPTGTTAGM--DRTQLGPIIHAKCRSES 810