Miyakogusa Predicted Gene
- Lj5g3v0087430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0087430.1 Non Chatacterized Hit- tr|A3BQA8|A3BQA8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.46,3e-18,PRE-MRNA CLEAVAGE COMPLEX II,NULL; seg,NULL;
ZINC_FINGER_C2H2_1,Zinc finger,
C2H2,NODE_39939_length_2664_cov_53.167793.path2.1
(683 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36480.1 | Symbols: | ENTH/VHS family protein | chr2:1530311... 162 7e-40
AT2G36480.2 | Symbols: | ENTH/VHS family protein | chr2:1530256... 162 7e-40
AT2G36480.3 | Symbols: | ENTH/VHS family protein | chr2:1530256... 162 1e-39
AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2... 122 7e-28
AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II | chr1:24... 101 2e-21
AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II | chr5:17... 100 3e-21
>AT2G36480.1 | Symbols: | ENTH/VHS family protein |
chr2:15303114-15306274 REVERSE LENGTH=830
Length = 830
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)
Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703
Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
++ E SG R W+ K +W+ K L E E+ + + E + ED V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVL----SEPESAIEDCQAVAA 758
Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
DE QC C+LCGE+FE+++ QE +WMFKGA Y+ N N S GPI+H CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810
Query: 670 SENPVSSV 677
+ + + S+
Sbjct: 811 TTSSLQSL 818
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 43/256 (16%)
Query: 6 TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
G R+ + G +K Y A IS QR+GL K+ N + + + + P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263
Query: 65 NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
GV +SWK+SEEEEFMWD M++ L+ D A++ K+ + DE+ +E +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314
Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
+ P + +D P F P S + EQ + GH F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354
Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQ-SPPPV 242
TN S ATR G + P+ + +G L S D +SP +S+ +Q + V
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDV 405
Query: 243 GKFHRSQLRDLQSGSF 258
+ H RD ++ F
Sbjct: 406 RRAHSLPQRDPRASRF 421
>AT2G36480.2 | Symbols: | ENTH/VHS family protein |
chr2:15302567-15306274 REVERSE LENGTH=844
Length = 844
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)
Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703
Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
++ E SG R W+ K +W+ K L E E+ + + E + ED V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVLS----EPESAIEDCQAVAA 758
Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
DE QC C+LCGE+FE+++ QE +WMFKGA Y+ N N S GPI+H CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810
Query: 670 SENPVSSV 677
+ + + S+
Sbjct: 811 TTSSLQSL 818
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 43/256 (16%)
Query: 6 TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
G R+ + G +K Y A IS QR+GL K+ N + + + + P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263
Query: 65 NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
GV +SWK+SEEEEFMWD M++ L+ D A++ K+ + DE+ +E +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314
Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
+ P + +D P F P S + EQ + GH F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354
Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQQ-SPPPV 242
TN S ATR G + P+ + +G L S D +SP +S+ +Q + V
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDV 405
Query: 243 GKFHRSQLRDLQSGSF 258
+ H RD ++ F
Sbjct: 406 RRAHSLPQRDPRASRF 421
>AT2G36480.3 | Symbols: | ENTH/VHS family protein |
chr2:15302567-15306274 REVERSE LENGTH=886
Length = 886
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 15/188 (7%)
Query: 492 SESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWH 551
SE++ +E ++ IG +F+ D IRELHPSVIS LFDD PH C+ CS++LK +E+ DRH+E H
Sbjct: 644 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 703
Query: 552 ATREREHSGLIKASR-WYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAM-VLA 609
++ E SG R W+ K +W+ K L E E+ + + E + ED V A
Sbjct: 704 DKKKLELSGTNSKCRVWFPKVDNWIAAKAGEL-EPEYEEVLS----EPESAIEDCQAVAA 758
Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
DE QC C+LCGE+FE+++ QE +WMFKGA Y+ N N S GPI+H CL
Sbjct: 759 DETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPAN--------SEASGPIVHTGCL 810
Query: 670 SENPVSSV 677
+ + + S+
Sbjct: 811 TTSSLQSL 818
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 42/233 (18%)
Query: 6 TGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQ-PRQNI 64
G R+ + G +K Y A IS QR+GL K+ N + + + + P +NI
Sbjct: 206 VGSRITDDGCEKQWY--GATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNI 263
Query: 65 NSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHH 124
GV +SWK+SEEEEFMWD M++ L+ D A++ K+ + DE+ +E +H
Sbjct: 264 -----GVPYDSWKNSEEEEFMWD-MHSRLSETDVATIN---PKNELHAPDESERLESENH 314
Query: 125 QSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVS 184
+ P + +D P F P S + EQ + GH F S
Sbjct: 315 LLKRPRFSALD---------------PRFDPANSTNSYSSEQKDPSSI----GHW-AFSS 354
Query: 185 TLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGD-ESPSRESSLRQ 236
TN S ATR G + P+ + +G L S D +SP +S+ +Q
Sbjct: 355 ------TNATSTATRKG---IQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQ 398
>AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 |
chr4:2472083-2475417 FORWARD LENGTH=808
Length = 808
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 10/173 (5%)
Query: 503 IGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGLI 562
+G EF D+++ + S IS L+ D P C+ C L+ K QE+ +H++WH T+ R
Sbjct: 625 LGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHK 684
Query: 563 K--ASRWYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLADENQCLCVLCG 620
+ + +W++ +S W+ G E+L + ++ ED V ADE+Q C LCG
Sbjct: 685 QNPSRKWFVSASMWLSG-AEALGAEAVPGFLPTEPTTEKKDDEDMAVPADEDQTSCALCG 743
Query: 621 ELFEEFYCQENGEWMFKGAVYV--PNSDINDDMGIRDASTGGGPIIHARCLSE 671
E FE+FY E EWM+KGAVY+ P D D S GPI+HA+C E
Sbjct: 744 EPFEDFYSDETEEWMYKGAVYMNAPEESTTD----MDKSQ-LGPIVHAKCRPE 791
>AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II |
chr1:24811262-24812512 REVERSE LENGTH=416
Length = 416
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 503 IGFEF-KPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGL 561
+G F P + H SVI L+ D P CS C L+ K QE+ +H++WH + R
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRKNRSVKTT 286
Query: 562 I------KASR-WYLKSSDWVVGKV--ESLSENEFADSVDRYGKETDRNQEDAMVLADEN 612
K SR W +S W+ E++ F + + K D + MV ADE+
Sbjct: 287 TRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQK-KKGKDEEPKQLMVPADED 345
Query: 613 QCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCLSE 671
Q C LC E FEEF+ E+ +WM+K AVY+ T G I+H +C+ E
Sbjct: 346 QKNCALCVEPFEEFFSHEDDDWMYKDAVYL---------------TKNGRIVHVKCMPE 389
>AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II |
chr5:17522653-17523885 FORWARD LENGTH=410
Length = 410
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 31/182 (17%)
Query: 503 IGFEF-KPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGL 561
+G F P + H SVI L+ D P C+ C ++ K QE+ +H++WH + R
Sbjct: 220 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKCQEEHSKHMDWHVRKNRSVKTT 279
Query: 562 I------KASR-WYLKSSDWVV-----GKVESLSENEFADSVDRYGKETDRNQEDAMVLA 609
K SR W +S W+ G VE S F + E D+ Q+ MV A
Sbjct: 280 TRLGQQPKKSRGWLASASLWLCAPTGGGTVEVAS---FGGGEMQKKNEKDQVQKQHMVPA 336
Query: 610 DENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCL 669
DE+Q C LC E FEEF+ E +WM+K AVY+ T G I+H +C+
Sbjct: 337 DEDQKNCALCVEPFEEFFSHEADDWMYKDAVYL---------------TKNGRIVHVKCM 381
Query: 670 SE 671
E
Sbjct: 382 PE 383