Miyakogusa Predicted Gene
- Lj5g3v0087430.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0087430.1 Non Chatacterized Hit- tr|A3BQA8|A3BQA8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.46,3e-18,PRE-MRNA CLEAVAGE COMPLEX II,NULL; seg,NULL;
ZINC_FINGER_C2H2_1,Zinc finger,
C2H2,NODE_39939_length_2664_cov_53.167793.path2.1
(2055 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP034189 homologue to UniRef100_A7PPJ2 Cluster: Chromos... 1015 0.0
gnl|LJGI|TC75808 430 e-119
gnl|LJGI|TC66091 similar to UniRef100_A7PPJ2 Cluster: Chromosome... 161 2e-38
>gnl|LJGI|BP034189 homologue to UniRef100_A7PPJ2 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 526
Score = 1015 bits (512), Expect = 0.0
Identities = 518/520 (99%)
Strand = Plus / Plus
Query: 910 tttgaaactgcagctgggaagggcggaaagttatccaacatgccaattactaataggctt 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tttgaaactgcagctgggaagggcggaaagttatccaacatgccaattactaataggctt 66
Query: 970 cctacttcaagaagcttggatacagggaagcttccatctatattaggagatcggccttcc 1029
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 67 cctacttcaagaagcttggatacagggaatcttccatctatattaggagttcggccttcc 126
Query: 1030 cagtcaagtggttcttcccctgccggattaattcctccagtgtctgcaattgcatcacct 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cagtcaagtggttcttcccctgccggattaattcctccagtgtctgcaattgcatcacct 186
Query: 1090 ccctcattaggtcgtcccaaagataattcctctgctctgccaaaaatacctccaagaagg 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ccctcattaggtcgtcccaaagataattcctctgctctgccaaaaatacctccaagaagg 246
Query: 1150 gctgcacagccaccaaggacatctgctctaccaccagcttcctctaatctcaaaagtgct 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gctgcacagccaccaaggacatctgctctaccaccagcttcctctaatctcaaaagtgct 306
Query: 1210 gcagtccaggcatcaagttctgccaataatgccttaaatccaattgcaaaccttttaaac 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcagtccaggcatcaagttctgccaataatgccttaaatccaattgcaaaccttttaaac 366
Query: 1270 tcattagttgcaaagggtttgatctctgcagaaaccgagacaacagctaaggtgccatct 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcattagttgcaaagggtttgatctctgcagaaaccgagacaacagctaaggtgccatct 426
Query: 1330 gagatgctgactcgattggaagatcaaagtgacagcattaccaccagtagctctttgcct 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gagatgctgactcgattggaagatcaaagtgacagcattaccaccagtagctctttgcct 486
Query: 1390 ggtgcttcagtgtctggttctgcagtcccagtcccttcta 1429
||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggtgcttcagtgtctggttctgcagtcccagtcccttcta 526
>gnl|LJGI|TC75808
Length = 766
Score = 430 bits (217), Expect = e-119
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 1839 atgcttgtgcgtgttgtgtggtgagctatttgaagagttttactgtcaggaaaatggtga 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcttgtgcgtgttgtgtggtgagctatttgaagagttttactgtcaggaaaatggtga 60
Query: 1899 gtggatgttcaaaggggctgtttatgtgcctaactctgatatcaatgatgatatgggaat 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggatgttcaaaggggctgtttatgtgcctaactctgatatcaatgatgatatgggaat 120
Query: 1959 tagagatgcgagtacaggagggggtcccatcattcatgcaagatgcttatcagagaaccc 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagagatgcgagtacaggagggggtcccatcattcatgcaagatgcttatcagagaaccc 180
Query: 2019 agtttccagtgtcctgaacatggagcaggattaaagc 2055
|||||||||||||||||||||||||||||||||||||
Sbjct: 181 agtttccagtgtcctgaacatggagcaggattaaagc 217
>gnl|LJGI|TC66091 similar to UniRef100_A7PPJ2 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (28%)
Length = 1340
Score = 161 bits (81), Expect = 2e-38
Identities = 335/419 (79%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 1507 attggctttgagtttaagcctgatgtaatccgagagttgcatccatctgtaattagtgga 1566
||||||||||| ||||| ||||||||||| ||||| |||||||| ||| || || | |
Sbjct: 536 attggctttgattttaaacctgatgtaattcgagaaatgcatccacatgtgatcagggaa 595
Query: 1567 ttatttgatgattttccacatcattgcagcatttgtagccttaagcttaaattccaagaa 1626
||||| |||||| | || ||||||||||| |||||| | ||| ||||||| ||||||
Sbjct: 596 ttattggatgatctcccgcatcattgcagaatttgtggtgttaggcttaaacagcaagaa 655
Query: 1627 cagttcgatagacacttggagtggcatgccacaagagaaagagaacacagtggtctaatt 1686
||||| ||||||| ||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct: 656 cagtttaatagacatttggagtggcatgccacaagagagaaagaacaaaatggtctaatt 715
Query: 1687 aaggcatc---gagatggtatctgaaatcaagtgactgggttgttggcaaggttgaaagt 1743
|||||| ||||||||| || |||| ||||||| ||| | ||||| |||| |
Sbjct: 716 ttggcatcaagaagatggtatgcaaactcaaatgactggattgcttgcaagtctgaatat 775
Query: 1744 ctatctgaaaatgagttcgctgattctgtagatagatatggcaaggaaacagacagaaat 1803
| ||| || ||||||| |||||||||||||| | ||| ||| | || ||| | | |
Sbjct: 776 caatcagagaatgagtctactgattctgtagatgtacatgacaaaaagaccgacggtagt 835
Query: 1804 caagaggatgcaatggttctagctgatgaaaaccaatgcttgtgcgtgttgtgtggtgag 1863
||| |||| | ||||||||||| |||||||||| ||||||||||| || ||||| |||
Sbjct: 836 caatgggatactatggttctagcagatgaaaacccgtgcttgtgcgtattttgtggcgag 895
Query: 1864 ctatttgaagagttttactgtcaggaaaatggtgagtggatgttcaaaggggctgttta 1922
||||||||||| | |||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 896 ctatttgaagatgtgtactgtcaggaaaaggacccgtggatgttcaaagggggtgttta 954
Score = 79.8 bits (40), Expect = 6e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 1237 aatgccttaaatccaattgcaaaccttttaaactcattagttgcaaagggtttgat 1292
|||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct: 275 aatgccttgaatccaattgaaaaccttttaaactcattagtcgcaaaaggtttgat 330