Miyakogusa Predicted Gene
- Lj5g3v0068810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0068810.1 Non Chatacterized Hit- tr|K4B4V9|K4B4V9_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,35.76,1e-18,Myb_DNA-bind_3,Myb/SANT-like domain;
seg,NULL,CUFF.52471.1
(321 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27260.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 73 3e-13
AT1G30140.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 59 5e-09
AT2G24960.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 55 8e-08
AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 49 4e-06
>AT5G27260.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:9603943-9604930
FORWARD LENGTH=303
Length = 303
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 9 QSKKRQ------WTAEEDAVLVAGLLQLVDDGWKADANSFKPGYTKVLEKHLQTKIPD-- 60
Q KKR+ W+ EE +LV L++ +++ W+ D+N T +E +I
Sbjct: 5 QPKKRKKGDYNPWSPEETKLLVQLLVEGINNNWR-DSNGTISKLT--VETKFMPEINKEF 61
Query: 61 CKLKASPHIESRVKHIKKQYFAIKDMFGPSASGFGWDPTRNMIVVEREIYREWCKSHPVA 120
C+ K H SR+K++K QY + D+ +SGFGWDP E++ ++ K+HP
Sbjct: 62 CRSKNYNHYLSRMKYLKIQYQSCLDL-QRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNN 120
Query: 121 VGLYGKPFPHFDSLDIVFGKDRATGTHAESPADAA 155
L F FD L I+FG+ ATG +A D+
Sbjct: 121 KQLRYDTFEFFDELQIIFGEGVATGKNAIGLCDST 155
>AT1G30140.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes -
10 (source: NCBI BLink). | chr1:10598764-10599527
FORWARD LENGTH=222
Length = 222
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 14 QWTAEEDAVLVAGLLQLVDDGWKADANSFKPGYTKVLEKHLQT--KIPDCKLKASPHIES 71
QWT +E VL+ +L+ W+ + G V K L K C K + S
Sbjct: 16 QWTPDETDVLI----ELIRQNWRDSSGII--GKLTVESKLLPALNKRLGCN-KNHKNYMS 68
Query: 72 RVKHIKKQYFAIKDMFGPSASGFGWDPTRNMIVVEREIYREWCKSHPVAVGLYGKPFPHF 131
R+K +K Y + D+ +SGFGWDP E++R++ K+HP + + HF
Sbjct: 69 RLKFLKNLYQSYLDL-KRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHF 127
Query: 132 DSLDIVFGKDRATGTHAESPADAA 155
+ L I+FG ATG+ A +D+
Sbjct: 128 EDLQIIFGDVVATGSFAVGMSDST 151
>AT2G24960.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G02210.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr2:10617263-10620034 FORWARD LENGTH=774
Length = 774
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 69 IESRVKHIKKQYFAIKDMFGPSASGFGWDPTRNMIVVEREIYREWCKSHPVAVGLYGKPF 128
+++R KH+++ Y IK F +GF WD R+M++ + +I+ + ++HP A K
Sbjct: 378 LKNRYKHLRRLYNDIK--FLLEQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTI 435
Query: 129 PHFDSLDIVFGKDRATGTHA 148
P + +L +FGK+ + G +
Sbjct: 436 PSYPNLCFIFGKETSDGRYT 455
>AT2G29880.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27260.1); Has 260 Blast hits to 212 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 10; Plants - 240; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr2:12742536-12743545
FORWARD LENGTH=308
Length = 308
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Query: 3 GTTESQQSKKRQ------WTAEEDAVLVAGLLQLVDDGWKADANSFKPGYTKVLEKHLQT 56
G + SKK++ W+ +E L A L+ + GW+ + + L
Sbjct: 4 GDQAGETSKKKKKGPYMSWSDQECYELTAILVDAIKRGWRDKNGTISKTTVERKILPLLN 63
Query: 57 KIPDCKLKASPHIESRVKHIKKQYFAIKDMFGPSASGFGWDPTRNMIVVEREIYREWCKS 116
K C + ++ SR+K +KK+Y +F S SGFGWDP +++ +
Sbjct: 64 KKFKCNKTYTNYL-SRMKSMKKEYSVYAALFWFS-SGFGWDPITKQFTAPDDVWAAYLMG 121
Query: 117 HPVAVGLYGKPFPHFDSLDIVFGKDRATGTHA 148
HP + F F+ L ++F A G +A
Sbjct: 122 HPNHHHMRTSTFEDFEDLQLIFESAIAKGNNA 153