Miyakogusa Predicted Gene

Lj4g3v3113960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113960.2 Non Characterized Hit- tr|B9S0V4|B9S0V4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,58.43,3e-19,FAMILY NOT NAMED,NULL; DUF599,Protein of unknown
function DUF599; seg,NULL,CUFF.52387.2
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g106520.1 | transmembrane protein, putative | HC | chr8:44...   117   2e-27
Medtr8g106520.2 | transmembrane protein, putative | HC | chr8:44...   108   9e-25
Medtr8g106530.1 | transmembrane protein, putative | HC | chr8:44...    73   6e-14
Medtr5g068640.1 | transmembrane protein, putative | HC | chr5:29...    69   7e-13

>Medtr8g106520.1 | transmembrane protein, putative | HC |
           chr8:44942443-44940421 | 20130731
          Length = 233

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDLETQLVYGNRTSITASI 60
           M+DP+KNG+LAVQTIRNN+M                GVFASN+ ET+LV+GN+TS+ +SI
Sbjct: 53  MSDPMKNGVLAVQTIRNNIMASTLLATTAITLSSLIGVFASNETETKLVFGNKTSLNSSI 112

Query: 61  KRLSMSLCFLVAFLCNMQSIRYYAQ 85
           KRL +SLCFLVAFLCNMQSIRYYA 
Sbjct: 113 KRLFISLCFLVAFLCNMQSIRYYAH 137


>Medtr8g106520.2 | transmembrane protein, putative | HC |
          chr8:44943202-44940421 | 20130731
          Length = 177

 Score =  108 bits (271), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 61/81 (75%)

Query: 5  LKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDLETQLVYGNRTSITASIKRLS 64
          +KNG+LAVQTIRNN+M                GVFASN+ ET+LV+GN+TS+ +SIKRL 
Sbjct: 1  MKNGVLAVQTIRNNIMASTLLATTAITLSSLIGVFASNETETKLVFGNKTSLNSSIKRLF 60

Query: 65 MSLCFLVAFLCNMQSIRYYAQ 85
          +SLCFLVAFLCNMQSIRYYA 
Sbjct: 61 ISLCFLVAFLCNMQSIRYYAH 81


>Medtr8g106530.1 | transmembrane protein, putative | HC |
           chr8:44946475-44943749 | 20130731
          Length = 508

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 3   DPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDLETQLVYGNRTSITASIKR 62
           DP KNG+L VQTIRNN+M                G+FAS+   +        S T+SIKR
Sbjct: 312 DPFKNGVLGVQTIRNNIMASNLLATTAITLSSLIGIFASSSWSSDDTSSILQS-TSSIKR 370

Query: 63  LSMSLCFLVAFLCNMQSIRYYAQ 85
           +S+++CFLVAFLCN+QSIR Y  
Sbjct: 371 ISITICFLVAFLCNVQSIRCYCH 393



 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDLETQLVYGNRTSITASI 60
           M+DP KNG+LA+QTIRNN+M                G+FAS+   +     +    T+SI
Sbjct: 54  MSDPSKNGVLAIQTIRNNIMASTLLSTTAITLSSLIGIFASSSWSSDDTSSSILQSTSSI 113

Query: 61  KRLSMSLCFLVAFLCNMQSIRYYAQ 85
           K +S+++CFLVAFLCN+QSIR Y  
Sbjct: 114 KHISITICFLVAFLCNVQSIRCYCH 138


>Medtr5g068640.1 | transmembrane protein, putative | HC |
           chr5:29072389-29070970 | 20130731
          Length = 254

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDLE----TQLVYGNRTSI 56
           M D  KNG+LAVQ++RNN+M                 V  S+  E      LV+G+RT +
Sbjct: 53  MEDVSKNGVLAVQSLRNNIMASTLLASTAIMLSSLIAVLMSSRNEGRSVVSLVFGDRTEL 112

Query: 57  TASIKRLSMSLCFLVAFLCNMQSIRYYAQ 85
             SIK  S+ +CF++AFL N+QSIRYY+ 
Sbjct: 113 VLSIKFFSILVCFMLAFLLNVQSIRYYSH 141