Miyakogusa Predicted Gene

Lj4g3v3113960.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113960.2 Non Chatacterized Hit- tr|B9S0V4|B9S0V4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,58.43,3e-19,FAMILY NOT NAMED,NULL; DUF599,Protein of unknown
function DUF599; seg,NULL,CUFF.52387.2
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18215.1 | Symbols:  | Protein of unknown function, DUF599 | ...    82   8e-17
AT5G24600.1 | Symbols:  | Protein of unknown function, DUF599 | ...    65   1e-11
AT5G24600.2 | Symbols:  | Protein of unknown function, DUF599 | ...    64   1e-11

>AT3G18215.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr3:6240968-6242358 FORWARD LENGTH=244
          Length = 244

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVFASNDL-----ETQLVYGNRTS 55
           M +PLKNG LAVQTIRNN+M                GVF SN        T L+YG+++ 
Sbjct: 54  MTEPLKNGTLAVQTIRNNIMASTLLATTAITLCSIIGVFVSNSSSSKSTATNLIYGSKSP 113

Query: 56  ITASIKRLSMSLCFLVAFLCNMQSIRYYAQ 85
             AS K  ++ +CFL+AFLCN+QSIRYYA 
Sbjct: 114 RLASFKNFAILICFLMAFLCNIQSIRYYAH 143


>AT5G24600.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:8421790-8423342 REVERSE LENGTH=248
          Length = 248

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVF---ASNDLETQLVYGNRTSIT 57
           M D  KNG+LAVQT+RNN+M                 V    A+ +     V+G+++   
Sbjct: 53  MEDSSKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRA 112

Query: 58  ASIKRLSMSLCFLVAFLCNMQSIRYYAQ 85
            S+K  ++ +CFLVAFL N+QSIRYY+ 
Sbjct: 113 FSLKFFAILVCFLVAFLLNVQSIRYYSH 140


>AT5G24600.2 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:8421697-8423342 REVERSE LENGTH=243
          Length = 243

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 1   MNDPLKNGILAVQTIRNNMMXXXXXXXXXXXXXXXXGVF---ASNDLETQLVYGNRTSIT 57
           M D  KNG+LAVQT+RNN+M                 V    A+ +     V+G+++   
Sbjct: 53  MEDSSKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRA 112

Query: 58  ASIKRLSMSLCFLVAFLCNMQSIRYYAQ 85
            S+K  ++ +CFLVAFL N+QSIRYY+ 
Sbjct: 113 FSLKFFAILVCFLVAFLLNVQSIRYYSH 140