Miyakogusa Predicted Gene

Lj4g3v3113130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113130.1 Non Chatacterized Hit- tr|B9SHN6|B9SHN6_RICCO
Histidyl-tRNA synthetase, putative OS=Ricinus
communis,48.45,2e-17,seg,NULL; Lyase_aromatic,Aromatic amino acid
lyase; no description,NULL,gene.g58092.t1.1
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g04700.1                                                       118   2e-27
Glyma05g35020.1                                                        75   2e-14

>Glyma08g04700.1 
          Length = 754

 Score =  118 bits (295), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 72/104 (69%), Gaps = 5/104 (4%)

Query: 8   LLSVSAIIDRQXXXXXXXXXXXXXFSCEALKADVTAFNLMDSGDGHTFKDQVRVAGDMRV 67
           LL+VSAI+D Q             FSCEALKAD T FNLMDSGDGHT KD+V VA ++RV
Sbjct: 85  LLAVSAIVDHQSAALSAFADVAAAFSCEALKADATPFNLMDSGDGHTSKDEVAVAANIRV 144

Query: 68  MLNGSKFVRNDNDGKDKNPSVTMVPNVHGAVREQVKLLHSKMKL 111
           +LNGSK V     GK+K  SV  VP VHG+VREQ K LHS+M++
Sbjct: 145 LLNGSKSV-----GKEKIRSVARVPKVHGSVREQAKALHSRMRV 183


>Glyma05g35020.1 
          Length = 177

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 40/59 (67%)

Query: 8   LLSVSAIIDRQXXXXXXXXXXXXXFSCEALKADVTAFNLMDSGDGHTFKDQVRVAGDMR 66
           LL+VSAI+DRQ             FSCEALKAD+T FNLMDSGDGH  K +V VA DMR
Sbjct: 119 LLAVSAILDRQSAALSAFADVAAAFSCEALKADITPFNLMDSGDGHASKAEVAVAADMR 177