Miyakogusa Predicted Gene

Lj4g3v3113130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113130.1 Non Characterized Hit- tr|B9SHN6|B9SHN6_RICCO
Histidyl-tRNA synthetase, putative OS=Ricinus
communis,48.45,2e-17,seg,NULL; Lyase_aromatic,Aromatic amino acid
lyase; no description,NULL,gene.g58092.t1.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g057860.1 | histidyl-tRNA synthetase | HC | chr1:25470664-...   112   6e-26

>Medtr1g057860.1 | histidyl-tRNA synthetase | HC |
           chr1:25470664-25459007 | 20130731
          Length = 868

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 5/104 (4%)

Query: 8   LLSVSAIIDRQXXXXXXXXXXXXXFSCEALKADVTAFNLMDSGDGHTFKDQVRVAGDMRV 67
           LL+VSA++D Q             FSCEALKADVT FNLMDSGDGH+ K++V VAGDMR+
Sbjct: 120 LLAVSAVLDHQSAGLLGFADVAAAFSCEALKADVTVFNLMDSGDGHSSKEEVGVAGDMRI 179

Query: 68  MLNGSKFVRNDNDGKDKNPSVTMVPNVHGAVREQVKLLHSKMKL 111
           +LNGSKFV     GK+  P V  +  VHG +RE+ K +HS+M++
Sbjct: 180 LLNGSKFV-----GKESVPEVVKIVKVHGVMREKAKSVHSRMRV 218