Miyakogusa Predicted Gene
- Lj4g3v2846370.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2846370.1 tr|Q4V9B5|Q4V9B5_DANRE Baz1a protein (Fragment)
OS=Danio rerio GN=baz1a PE=2 SV=1,38.13,6e-18,coiled-coil,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; domain in different
transcription,CUFF.51876.1
(694 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g095210.1 | nucleosome/chromatin assembly factor group pro... 979 0.0
Medtr2g014490.2 | homeobox domain protein | HC | chr2:4157060-41... 66 1e-10
Medtr2g014490.1 | homeobox domain protein | HC | chr2:4156582-41... 66 1e-10
Medtr4g078860.2 | homeodomain transcriptional regulator | HC | c... 59 2e-08
Medtr4g078860.3 | homeodomain transcriptional regulator | HC | c... 58 3e-08
Medtr4g088375.4 | homeobox domain protein | HC | chr4:34983006-3... 58 3e-08
Medtr4g088375.2 | homeobox domain protein | HC | chr4:34983103-3... 58 3e-08
Medtr4g088375.1 | homeobox domain protein | HC | chr4:34983103-3... 58 3e-08
Medtr4g088375.3 | homeobox domain protein | HC | chr4:34983103-3... 58 3e-08
Medtr4g078860.4 | homeodomain transcriptional regulator | HC | c... 58 3e-08
Medtr4g078860.1 | homeodomain transcriptional regulator | HC | c... 58 3e-08
>Medtr8g095210.1 | nucleosome/chromatin assembly factor group
protein, putative | HC | chr8:39816547-39824398 |
20130731
Length = 697
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/708 (69%), Positives = 564/708 (79%), Gaps = 25/708 (3%)
Query: 1 MPLLRRKAFALVEPPEDLKLDEQVYTIRYTKEIFRDYPDYLKRLSLYRQRVWTCNFTGKT 60
MPLLRRK AL EPPEDLK DE VY +R+TKEIFRDY DYL+RL+LYRQRVW+C TGKT
Sbjct: 1 MPLLRRKPLALAEPPEDLKPDEHVYQVRFTKEIFRDYHDYLQRLNLYRQRVWSCKVTGKT 60
Query: 61 GLTYEEALVSEQRANEKVQQIPKEFMASALRIIQYSMLPLKDLADSIAEKLNERLFVGAE 120
GLTYEEA+VSEQRA EK Q PKEFM AL+IIQYSMLPLK+LADS+AEKL ERLFVGAE
Sbjct: 61 GLTYEEAIVSEQRATEKFLQFPKEFMTPALKIIQYSMLPLKELADSLAEKLQERLFVGAE 120
Query: 121 VYGKKDDGVCPCKILKVIKKGVDQLCYEVAWLDKNKNISEKAEISAEDLVQKKPLFSRNT 180
+YGKK+D VCPCKILKVI +G D+ CYEVAW DKNKNISEK E+ AEDLVQKKPLFSRNT
Sbjct: 121 LYGKKNDDVCPCKILKVIHEGADKYCYEVAWYDKNKNISEKTEVHAEDLVQKKPLFSRNT 180
Query: 181 LKSFIRESTYRNAPWVLNEELALNHGISTEIPQELKERVFFKDGLIVCSKKRKNE---DE 237
LKSFIRESTYRNAPWVL+++LA NHGIST++P+EL+ +VF KDGLI+CSKKR NE +E
Sbjct: 181 LKSFIRESTYRNAPWVLHDKLAQNHGISTDVPEELRGKVFLKDGLIICSKKRNNEESMEE 240
Query: 238 TENSKRKKLDGKLVNGSAEEKE-------PIKYPIDDLLVKRSADDPVFTDRPSPTRDFS 290
+ KRKKLD LVNGSA+EKE P+KYPIDDLLVK S DDPVFTDRPSP+RDF+
Sbjct: 241 ADKHKRKKLDRTLVNGSAQEKEHEEHKEIPVKYPIDDLLVKPSPDDPVFTDRPSPSRDFN 300
Query: 291 VPMFCVGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIK 350
VPM CVG+LLMVWDFC SFGK LNL PYSLEDFENAICHKD N VLLVESHAALFRVLIK
Sbjct: 301 VPMHCVGNLLMVWDFCTSFGKQLNLSPYSLEDFENAICHKDGNAVLLVESHAALFRVLIK 360
Query: 351 EDGEYSSIVKKR---KITLINWTEYLCDFLQMINIPALRQHEGTIKRGHYGLLDANVKLG 407
+DGEY+S V+KR KIT++NW EYLCDFL+MINIP LR EGTIKRGHY L+DA+ KL
Sbjct: 361 DDGEYTSAVQKRSVKKITMVNWREYLCDFLEMINIPQLRHCEGTIKRGHYCLVDASAKLE 420
Query: 408 ILSELVNQVLETGAFRETMDELMEQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGI 467
IL ELVN+ LET FRE +DE +EQRQ
Sbjct: 421 ILCELVNRALETAIFRENLDEFIEQRQELGASKREQALEEGRKRREQKERLKADSES--- 477
Query: 468 MNGHHPNSANGDVGKKSNGEIQNGDVGKKSNGKIESSRQNNPLGASGTKHSNSASKKIPT 527
NG+H N A D+ +N QNG VGKK NG+IESSRQ+N LG SG K S+ ASKK P
Sbjct: 478 -NGNHLNGA--DILSNNNHIKQNGHVGKKINGEIESSRQDNSLGKSGVKRSSPASKKTPK 534
Query: 528 KLNSELKEPVENGKDILKQSKGDKDPSEKNS-KQKKEYFQKEMEKRLIRRSPLGQDRERN 586
L++ELKEP ENGK++ + KDPSEKNS +Q++EYF++EMEKR I RSPLG+DR+ N
Sbjct: 535 NLDTELKEPAENGKELSR-----KDPSEKNSIEQRREYFEREMEKRPISRSPLGKDRDYN 589
Query: 587 RYWWFHRDWRIFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICS 646
RYWWF RD RIFVE+ DS WGYYSSKEELDAL+GSLNCKG RERALQKQLE Y SIC+
Sbjct: 590 RYWWFRRDGRIFVESCDSKEWGYYSSKEELDALIGSLNCKGERERALQKQLEINYRSICT 649
Query: 647 ELRKRSKDLMSNTASDESVLRRSTRVRAPPRQNPANAFLRYANKWKEE 694
EL+KRSK+L+ N A+DESVLRRSTRVRAPPR+NPA+AFL+Y NKWKE+
Sbjct: 650 ELQKRSKELLQNIANDESVLRRSTRVRAPPRENPASAFLKYVNKWKED 697
>Medtr2g014490.2 | homeobox domain protein | HC | chr2:4157060-4148227
| 20130731
Length = 1807
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 546 QSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWF--------HRDWR 596
QS+ S+++ Q K Y E+ + RS PLGQDR RNRYW F R
Sbjct: 1124 QSQMHAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGR 1183
Query: 597 IFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
IFVE+ D + W S+E D L+ SL+ +G+RE L+ L+K S +RK ++
Sbjct: 1184 IFVEHHDGS-WRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQ 1239
>Medtr2g014490.1 | homeobox domain protein | HC | chr2:4156582-4148228
| 20130731
Length = 1796
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 546 QSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWF--------HRDWR 596
QS+ S+++ Q K Y E+ + RS PLGQDR RNRYW F R
Sbjct: 1112 QSQMHAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGR 1171
Query: 597 IFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
IFVE+ D + W S+E D L+ SL+ +G+RE L+ L+K S +RK ++
Sbjct: 1172 IFVEHHDGS-WRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQ 1227
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 296 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 351
VG+LLMVW F +F L LWP++L++F A DS LL E H A+ +++IK+
Sbjct: 573 VGNLLMVWRFLITFADALELWPFTLDEFVQAFHDYDSR--LLGEIHVAVLKMIIKD 626
>Medtr4g078860.2 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1513
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRD--------WRIFVENKDS 604
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSKDLMSNTASDES 664
W S E DAL+ SL+ +G+RE L L++ +S +R+ N + E
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR-------NVQNGEM 1211
Query: 665 VLRRSTRVR 673
++++ V+
Sbjct: 1212 IMQKGDTVK 1220
>Medtr4g078860.3 | homeodomain transcriptional regulator | HC |
chr4:30499085-30486036 | 20130731
Length = 1413
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRD--------WRIFVENKDS 604
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSKDLMSNTASDES 664
W S E DAL+ SL+ +G+RE L L++ +S +R+ N + E
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR-------NVQNGEM 1211
Query: 665 VLRRSTRVR 673
++++ V+
Sbjct: 1212 IMQKGDTVK 1220
>Medtr4g088375.4 | homeobox domain protein | HC |
chr4:34983006-34993442 | 20130731
Length = 1682
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWF--------HRDWRIFVENKDS 604
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1021 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1080
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1081 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1128
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 296 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 351
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 485 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 538
>Medtr4g088375.2 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1683
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWF--------HRDWRIFVENKDS 604
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1021 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1080
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1081 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1128
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 296 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 351
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 485 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 538
>Medtr4g088375.1 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1717
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWF--------HRDWRIFVENKDS 604
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1055 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1114
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1115 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1162
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 296 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 351
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 519 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 572
>Medtr4g088375.3 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1464
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRD--------WRIFVENKDS 604
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 802 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 861
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 653
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 862 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 909
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 296 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 351
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 266 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 319
>Medtr4g078860.4 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1737
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRD--------WRIFVENKDS 604
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1074 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1133
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 650
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1134 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1178
>Medtr4g078860.1 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1763
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 554 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRD--------WRIFVENKDS 604
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 605 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 650
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1204