Miyakogusa Predicted Gene

Lj4g3v2775620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2775620.1 tr|G1MDL8|G1MDL8_AILME Ubiquitin
carboxyl-terminal hydrolase OS=Ailuropoda melanoleuca GN=USP30
PE=3,25.98,1e-17,UCH_2_2,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2, conserved site; UCH,Peptidase C19, u,CUFF.51620.1
         (572 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g092350.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   665   0.0  
Medtr3g083600.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...    55   2e-07
Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like pro...    55   2e-07
Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like pro...    55   2e-07
Medtr7g106570.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...    51   3e-06

>Medtr8g092350.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr8:38603233-38595101 | 20130731
          Length = 573

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/521 (65%), Positives = 394/521 (75%), Gaps = 10/521 (1%)

Query: 53  NLDN--KKPLLVPGLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQ 110
           N DN   KP+ VPGL NL NNCFLNVVLQALASC CF  FL  VIAE GT + +     +
Sbjct: 60  NQDNHSDKPIFVPGLRNLGNNCFLNVVLQALASCVCFQSFLDDVIAEYGTDEQLV----E 115

Query: 111 SMPLAASLVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSL 170
           +MPL  SL +LLQELSSVS +KV+LSPR++M AMS Y P+F+LT QQDAAEAF+HLL +L
Sbjct: 116 NMPLVFSLASLLQELSSVSAQKVVLSPRQLMRAMSSYIPNFDLTSQQDAAEAFVHLLGTL 175

Query: 171 REEFGGCYAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRS 230
           +EE GGCYAP +SSLAD  ASNNRI+ PIQ +W+SE ERW++LFLGPFDGIL S LTC+S
Sbjct: 176 KEEVGGCYAPKISSLADTFASNNRILTPIQTEWQSEPERWRRLFLGPFDGILNSGLTCQS 235

Query: 231 CSSQISMNFEHFDCLPLSPVLSDSFTIRVGCTLVDCLKQFIVAEHVENYHCSHCWHNAAI 290
           C SQIS  FE+FDCLPLSPVLS+ + IRVGCTL +CLKQFIVAEH+ENY+CSHCWHNAAI
Sbjct: 236 CLSQISNKFENFDCLPLSPVLSNRYAIRVGCTLEECLKQFIVAEHIENYNCSHCWHNAAI 295

Query: 291 KYISXXXXXXXXXXXXXXCSEQELCNCRTKFNLEKLPWSTRFSHVLKQLSIAQCPRILCI 350
           KY+S              CS+QE C+C+  +NLE LPWS RFSH LKQLSIA+CPRILCI
Sbjct: 296 KYLSLMEGDKVELGNLGRCSDQEFCDCQKTYNLENLPWSNRFSHALKQLSIARCPRILCI 355

Query: 351 QLKRVHMSIFGEPVKLQGHISFPLILDVLPFTTTRLGVNIQEVDIRSLPLHLQNSRRNPL 410
           QLKRVHM+ FGE  KLQGHISFPLILDV  F TTRLGV IQE D+  +      SR N L
Sbjct: 356 QLKRVHMNDFGESFKLQGHISFPLILDVSSFMTTRLGVKIQEEDVVKIQEEDVQSRSNSL 415

Query: 411 TNHYNQHSEVGTLKFSGI-NGEVREKINAGGLIDDGFASCTNRQASNDPIYPCSSSSVSI 469
            NH N HS +  +  SG+  G  RE+I+A   I+   +S T+RQA     +PCS SS SI
Sbjct: 416 PNHSNMHSGIIRMIKSGVLYGGAREQIDADARIEI-VSSSTSRQAILIN-FPCSGSSESI 473

Query: 470 HTDTQTQSIDKVDGSYNLVSQEACLYQLVSVVEHFGRAGGGHYTVYRCARAETSDVSGDR 529
            ++TQ+QSID VD S    SQ+ CLYQLVSVVEHFGRAGGGHYTVYRC R E+SDVSGD 
Sbjct: 474 QSNTQSQSIDTVDVSCTSDSQDTCLYQLVSVVEHFGRAGGGHYTVYRCVRPESSDVSGD- 532

Query: 530 CFNQTPRRWFCVSDSQVDAVSEEDVLSSEASLLFYERIPKN 570
           C NQ   RWF VSDS VDAVS E+VLS+EASLLFYERIP N
Sbjct: 533 CINQNSMRWFGVSDSHVDAVSVEEVLSAEASLLFYERIPNN 573


>Medtr3g083600.1 | ubiquitin carboxyl-terminal hydrolase | HC |
            chr3:37729491-37734222 | 20130731
          Length = 1070

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 488  VSQEACLYQLVSVVEHFGRAGGGHYTVY-RCARAETSDVSGDRCFNQTPRRWFCVSDSQV 546
            +++E   YQLV VVEH G   GGHY  Y R  +     V      + T   W+  SD+ V
Sbjct: 993  INEEEYKYQLVGVVEHSGTMRGGHYVAYVRGGQRNREKVDNKENESST---WYHASDAYV 1049

Query: 547  DAVSEEDVLSSEASLLFYER 566
              VS ++VL  EA +LFYER
Sbjct: 1050 RQVSLDEVLRCEAYILFYER 1069


>Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like
           protein | HC | chr1:34854787-34865759 | 20130731
          Length = 922

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 10/198 (5%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAASLVALLQ 123
           GL NL N CF+N  LQ L        F    + +   +  +E+       LA +   LL+
Sbjct: 321 GLQNLGNTCFMNSALQCLVHTPPLAEFF---LEDYSDEINMENPLGMRGELALAFGDLLR 377

Query: 124 ELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGCYAPNVS 183
           +L S SG +  ++PR     ++ + P F+  +Q D+ E    LL  L E+          
Sbjct: 378 KLWS-SG-RTAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435

Query: 184 SLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISMNFEHFD 243
            + D     +  +A     WK+   R   L +    G   S+L C  C  +IS+ F+ F 
Sbjct: 436 EMKDSDGRPDEEVA--NECWKNHMARNDSLIVDECQGQYKSTLVCPEC-GKISITFDPFM 492

Query: 244 --CLPLSPVLSDSFTIRV 259
              LPL   ++ + TI V
Sbjct: 493 YLSLPLPSTVTRTMTITV 510


>Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like
           protein | HC | chr1:34854807-34865759 | 20130731
          Length = 922

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 10/198 (5%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAASLVALLQ 123
           GL NL N CF+N  LQ L        F    + +   +  +E+       LA +   LL+
Sbjct: 321 GLQNLGNTCFMNSALQCLVHTPPLAEFF---LEDYSDEINMENPLGMRGELALAFGDLLR 377

Query: 124 ELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGCYAPNVS 183
           +L S SG +  ++PR     ++ + P F+  +Q D+ E    LL  L E+          
Sbjct: 378 KLWS-SG-RTAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435

Query: 184 SLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISMNFEHFD 243
            + D     +  +A     WK+   R   L +    G   S+L C  C  +IS+ F+ F 
Sbjct: 436 EMKDSDGRPDEEVA--NECWKNHMARNDSLIVDECQGQYKSTLVCPEC-GKISITFDPFM 492

Query: 244 --CLPLSPVLSDSFTIRV 259
              LPL   ++ + TI V
Sbjct: 493 YLSLPLPSTVTRTMTITV 510


>Medtr7g106570.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr7:43382337-43390245 | 20130731
          Length = 899

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 58  KPLLVPGLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAAS 117
           + L + GLHNL N CF+N  +Q LA       F    + +   +   E+    +  LA S
Sbjct: 282 RSLGLTGLHNLGNTCFMNSAIQCLAHTPKLVDFF---LGDYRREINYENPLGMNGELALS 338

Query: 118 LVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGC 177
              LL++L  V G    L+P+   + ++ + P F+   Q D+ E    LL  L E+    
Sbjct: 339 FGDLLRQL-WVPGASP-LAPKMFKMKLANFAPQFSGYMQHDSQELLAFLLDGLHEDLNRV 396

Query: 178 YAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISM 237
                  + D     +  +A  +  W++   R   + +  F G   S+L C  C  ++S+
Sbjct: 397 KRKPYHEVKDADGRPDGEVA--EEYWRNHLARNDSIVVDSFQGQFRSTLICPFC-KKVSI 453

Query: 238 NFEHFDCLPL 247
            F+ F  L L
Sbjct: 454 TFDPFMYLSL 463